| Higher-order inter-chromosomal hubs shape 3D genome organization in the nucleus SA Quinodoz, N Ollikainen, B Tabak, A Palla, JM Schmidt, E Detmar, ... Cell 174 (3), 744-757. e24, 2018 | 727 | 2018 |
| A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling VR Ramirez-Carrozzi, D Braas, DM Bhatt, CS Cheng, C Hong, KR Doty, ... Cell 138 (1), 114-128, 2009 | 659 | 2009 |
| Histone methylation-dependent mechanisms impose ligand dependency for gene activation by nuclear receptors I Garcia-Bassets, YS Kwon, F Telese, GG Prefontaine, KR Hutt, CS Cheng, ... Cell 128 (3), 505-518, 2007 | 504 | 2007 |
| A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals M Garber, N Yosef, A Goren, R Raychowdhury, A Thielke, M Guttman, ... Molecular cell 47 (5), 810-822, 2012 | 413 | 2012 |
| High-resolution interrogation of functional elements in the noncoding genome NE Sanjana, J Wright, K Zheng, O Shalem, P Fontanillas, J Joung, ... Science 353 (6307), 1545-1549, 2016 | 312 | 2016 |
| Genetic determinants of co-accessible chromatin regions in activated T cells across humans RE Gate, CS Cheng, AP Aiden, A Siba, M Tabaka, D Lituiev, I Machol, ... Nature genetics 50 (8), 1140, 2018 | 160 | 2018 |
| Mechanisms establishing TLR4-responsive activation states of inflammatory response genes L Escoubet-Lozach, C Benner, MU Kaikkonen, J Lozach, S Heinz, ... PLoS genetics 7 (12), e1002401, 2011 | 151 | 2011 |
| Sensitive ChIP-DSL technology reveals an extensive estrogen receptor α-binding program on human gene promoters YS Kwon, I Garcia-Bassets, KR Hutt, CS Cheng, M Jin, D Liu, C Benner, ... Proceedings of the National Academy of Sciences 104 (12), 4852-4857, 2007 | 142 | 2007 |
| The specificity of innate immune responses is enforced by repression of interferon response elements by NF-κB p50 CS Cheng, KE Feldman, J Lee, S Verma, DB Huang, K Huynh, M Chang, ... Sci. Signal. 4 (161), ra11-ra11, 2011 | 100 | 2011 |
| Systematic epigenomic analysis reveals chromatin states associated with melanoma progression P Fiziev, KC Akdemir, JP Miller, EZ Keung, NS Samant, S Sharma, ... Cell reports 19 (4), 875-889, 2017 | 88 | 2017 |
| PHF6 regulates phenotypic plasticity through chromatin organization within lineage-specific genes YM Soto-Feliciano, JME Bartlebaugh, Y Liu, FJ Sánchez-Rivera, ... Genes & development, 2017 | 54 | 2017 |
| Single cell transcriptomics reveals opioid usage evokes widespread suppression of antiviral gene program TT Karagiannis, JP Cleary, B Gok, AJ Henderson, NG Martin, M Yajima, ... Nature communications 11 (1), 1-10, 2020 | 40 | 2020 |
| Iterative modeling reveals evidence of sequential transcriptional control mechanisms CS Cheng, MS Behar, GW Suryawanshi, KE Feldman, R Spreafico, ... Cell systems 4 (3), 330-343. e5, 2017 | 39 | 2017 |
| Genome-scale identification of transcription factors that mediate an inflammatory network during breast cellular transformation Z Ji, L He, A Rotem, A Janzer, CS Cheng, A Regev, K Struhl Nature communications 9 (1), 2068, 2018 | 22 | 2018 |
| Semiconductor-based DNA sequencing of histone modification states CS Cheng, K Rai, M Garber, A Hollinger, D Robbins, S Anderson, ... Nature communications 4, ncomms3672, 2013 | 20 | 2013 |
| ATAC-seq assay with low mitochondrial DNA contamination from primary human CD4+ T lymphocytes HD Rickner, SY Niu, CS Cheng JoVE (Journal of Visualized Experiments), e59120, 2019 | 14 | 2019 |
| Epigenetic control: slow and global, nimble and local CS Cheng, TL Johnson, A Hoffmann Genes & development 22 (9), 1110-1114, 2008 | 13 | 2008 |
| FOXR1 regulates stress response pathways and is necessary for proper brain development A Mota, HK Waxman, R Hong, GD Lagani, SY Niu, FL Bertherat, L Wolfe, ... PLoS genetics 17 (11), e1009854, 2021 | 3 | 2021 |
| Sequential rather than coincident molecular mechanisms govern the combinatorial control logic underlying pathogen-responsive gene expression programs CS Cheng, MS Behar, GW Suryawanshi, KE Feldman, R Spreafico, ... Cell systems 4 (3), 330, 2017 | 2 | 2017 |
