| Sustainable data analysis with Snakemake F Mölder, KP Jablonski, B Letcher, MB Hall, CH Tomkins-Tinch, V Sochat, ... F1000Research 10, 2021 | 874 | 2021 |
| Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning H Teng, MD Cao, MB Hall, T Duarte, S Wang, LJM Coin GigaScience 7 (5), giy037, 2018 | 172 | 2018 |
| Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe M Hunt, P Bradley, SG Lapierre, S Heys, M Thomsit, MB Hall, KM Malone, ... Wellcome open research 4, 2019 | 120 | 2019 |
| Freshwater monitoring by nanopore sequencing L Urban, A Holzer, JJ Baronas, MB Hall, P Braeuninger-Weimer, ... Elife 10, e61504, 2021 | 98 | 2021 |
| Rasusa: randomly subsample sequencing reads to a specified coverage MB Hall Journal of Open Source Software 7 (69), 3941, 2022 | 60 | 2022 |
| Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs RM Colquhoun, MB Hall, L Lima, LW Roberts, KM Malone, M Hunt, ... Genome biology 22, 1-30, 2021 | 45* | 2021 |
| Evaluation of Nanopore sequencing for Mycobacterium tuberculosis drug susceptibility testing and outbreak investigation: a genomic analysis MB Hall, MS Rabodoarivelo, A Koch, A Dippenaar, S George, ... The Lancet Microbe 4 (2), e84-e92, 2023 | 31* | 2023 |
| Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes M Hunt, B Letcher, KM Malone, G Nguyen, MB Hall, RM Colquhoun, ... Genome Biology 23 (1), 147, 2022 | 16 | 2022 |
| Whole genome deep sequencing analysis of cell-free DNA in samples with low tumour content D Ganesamoorthy, AJ Robertson, W Chen, MB Hall, MD Cao, K Ferguson, ... BMC cancer 22 (1), 85, 2022 | 12 | 2022 |
| Genomic sequencing from sputum for tuberculosis disease diagnosis, lineage determination, and drug susceptibility prediction K Nilgiriwala, MS Rabodoarivelo, MB Hall, G Patel, A Mandal, S Mishra, ... Journal of Clinical Microbiology 61 (3), e01578-22, 2023 | 9 | 2023 |
| Drug-resistant tuberculosis in pet ring-tailed lemur, Madagascar M LaFleur, KE Reuter, MB Hall, HH Rasoanaivo, S McKernan, ... Emerging Infectious Diseases 27 (3), 977, 2021 | 9 | 2021 |
| Assessment of the 2021 WHO Mycobacterium tuberculosis drug resistance mutation catalogue on an independent dataset MB Hall, LJM Coin The Lancet Microbe 3 (9), e645, 2022 | 3 | 2022 |
| Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data MB Hall, RR Wick, LM Judd, ANT Nguyen, EJ Steinig, O Xie, MR Davies, ... bioRxiv, 2024.03. 15.585313, 2024 | 1 | 2024 |
| Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data MB Hall, LJM Coin GigaScience 13, giae010, 2024 | 1* | 2024 |
| Concordance of targeted and whole genome sequencing for Mycobacterium tuberculosis genotypic drug susceptibility testing WC Charette, MS Rabodoarivelo, F Point, AM Knoblauch, ... Diagnostic Microbiology and Infectious Disease 109 (2), 116249, 2024 | | 2024 |
| Drug resistance prediction for Mycobacterium tuberculosis with reference graphs MB Hall, L Lima, LJM Coin, Z Iqbal Microbial Genomics 9 (8), 001081, 2023 | | 2023 |
| Examining bacterial variation with genome graphs and Nanopore sequencing M Hall | | 2022 |
| Automated connection of diagnostics with instant outbreak triage and live global surveillance for TB Z Iqbal, P Bradley, M Thomsit, S Heys, P Wintringer, MG López, M Hunt, ... | | 2019 |
Brice LetcherLBMC, ENS de Lyon & CNRSVerified email at ens-lyon.fr
