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Patrick McGillivray
Patrick McGillivray
Verified email at jhmi.edu - Homepage
Title
Cited by
Cited by
Year
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
1650*2020
Passenger mutations in more than 2,500 cancer genomes: overall molecular functional impact and consequences
S Kumar, J Warrell, S Li, PD McGillivray, W Meyerson, L Salichos, ...
Cell 180 (5), 915-927. e16, 2020
1142020
An integrative ENCODE resource for cancer genomics
J Zhang, D Lee, V Dhiman, P Jiang, J Xu, P McGillivray, H Yang, J Liu, ...
Nature communications 11 (1), 3696, 2020
1052020
A comprehensive catalog of predicted functional upstream open reading frames in humans
P McGillivray, R Ault, M Pawashe, R Kitchen, S Balasubramanian, ...
Nucleic acids research 46 (7), 3326-3338, 2018
872018
Parallel coding of first-and second-order stimulus attributes by midbrain electrosensory neurons
P McGillivray, K Vonderschen, ES Fortune, MJ Chacron
Journal of Neuroscience 32 (16), 5510-5524, 2012
712012
Using ALoFT to determine the impact of putative loss-of-function variants in protein-coding genes
S Balasubramanian, Y Fu, M Pawashe, P McGillivray, M Jin, J Liu, ...
Nature communications 8 (1), 1-11, 2017
472017
Network analysis as a grand unifier in biomedical data science
P McGillivray, D Clarke, W Meyerson, J Zhang, D Lee, M Gu, S Kumar, ...
Annual Review of Biomedical Data Science 1, 153-180, 2018
432018
Combined burden and functional impact tests for cancer driver discovery using DriverPower
S Shuai, S Gallinger, LD Stein
Nature communications 11 (1), 734, 2020
372020
Estimation of the carrier frequency of fumarate hydratase alterations and implications for kidney cancer risk in hereditary leiomyomatosis and renal cancer
B Shuch, S Li, H Risch, RS Bindra, PD McGillivray, M Gerstein
Cancer 126 (16), 3657-3666, 2020
262020
Distinguishing benign renal tumors with an oncocytic gene expression (ONEX) classifier
PD McGillivray, D Ueno, A Pooli, N Mendhiratta, JS Syed, KA Nguyen, ...
European urology 79 (1), 107-111, 2021
202021
Genomic heterogeneity and the small renal mass
D Ueno, Z Xie, M Boeke, J Syed, KA Nguyen, P McGillivray, A Adeniran, ...
Clinical Cancer Research 24 (17), 4137-4144, 2018
162018
Passenger mutations in 2500 cancer genomes: Overall molecular functional impact and consequences
S Kumar, J Warrell, S Li, PD McGillivray, W Meyerson, L Salichos, ...
bioRxiv, 280446, 2018
32018
NIMBus: a negative binomial regression based Integrative Method for mutation Burden Analysis
J Zhang, J Liu, P McGillivray, C Yi, L Lochovsky, D Lee, M Gerstein
BMC bioinformatics 21, 1-25, 2020
22020
Passenger mutation landscape in cancer genomes
S Kumar, J Warrel, P Mcgillivray, W Meyerson, S Li, L Salichos, ...
Cancer Research 78 (13_Supplement), 1279-1279, 2018
22018
Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing
I Cortés-Ciriano, JJK Lee, R Xi, D Jain, YL Jung, L Yang, D Gordenin, ...
Nature genetics 55 (6), 1076-1076, 2023
12023
Author Correction: Pan-cancer analysis of whole genomes
Nature 614 (7948), E39-E39, 2023
12023
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples
WU Meyerson, LJ Dursi, LB Wang, G Dong, WW Liang, A Weerasinghe, ...
Nature Publishing Group UK, 2020
2020
Sex differences in oncogenic mutational processes
SD Prokopec, RX Sun, F Yousif, N Schmitz, F Al-Shahrour, G Atwal, ...
Nature Publishing Group UK, 2020
2020
Annotation And Variant Impact Analysis Of Whole Genomes In Cancer
PD Mcgillivray
2019
Determining the impact of putative loss-of-function variants in protein-coding genes
S Balasubramanian, Y Fu, M Pawashe, P McGillivray, M Jin, J Liu, ...
bioRxiv, 106468, 2017
2017
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