Jay Ghurye
Jay Ghurye
Verily Life Sciences, LLC
Vahvistettu sähköpostiosoite verkkotunnuksessa google.com
Scaffolding of long read assemblies using long range contact information
J Ghurye, M Pop, S Koren, D Bickhart, CS Chin
BMC genomics 18 (1), 1-11, 2017
De novo assembly of the cattle reference genome with single-molecule sequencing
BD Rosen, DM Bickhart, RD Schnabel, S Koren, CG Elsik, E Tseng, ...
Gigascience 9 (3), giaa021, 2020
Metagenomic Assembly: Overview, Challenges and Applications
J Ghurye, V Cepeda-Espinoza, M Pop
The Yale Journal of Biology and Medicine 89 (3), 353-362, 2016
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes
ND Olson, TJ Treangen, CM Hill, V Cepeda-Espinoza, J Ghurye, S Koren, ...
Briefings in bioinformatics 20 (4), 1140-1150, 2019
Integrating Hi-C links with assembly graphs for chromosome-scale assembly
J Ghurye, A Rhie, BP Walenz, A Schmitt, S Selvaraj, M Pop, AM Phillippy, ...
PLoS computational biology 15 (8), e1007273, 2019
Towards complete and error-free genome assemblies of all vertebrate species
A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ...
BioRxiv, 2020
Modern technologies and algorithms for scaffolding assembled genomes
J Ghurye, M Pop
PLoS computational biology 15 (6), e1006994, 2019
Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation
DM Bickhart, M Watson, S Koren, K Panke-Buisse, LM Cersosimo, ...
Genome biology 20 (1), 1-18, 2019
Accurate chromosome-scale haplotype-resolved assembly of human genomes
S Garg, AA Fungtammasan, A Carroll, M Chou, A Schmitt, X Zhou, S Mac, ...
bioRxiv, 810341, 2020
Improved reference genome of the arboviral vector Aedes albopictus
U Palatini, R Masri, LV Cosme, S Koren, F Thibaud-Nissen, JK Biedler, ...
Genome Biology 21 (215), 2020
A chromosome-scale assembly of the major African malaria vector Anopheles funestus
J Ghurye, S Koren, ST Small, S Redmond, P Howell, AM Phillippy, ...
Gigascience 8 (6), giz063, 2019
Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle
WY Low, R Tearle, R Liu, S Koren, A Rhie, DM Bickhart, BD Rosen, ...
Nature communications 11 (1), 1-14, 2020
A framework to model human behavior at large scale during natural disasters
J Ghurye, G Krings, V Frias-Martinez
2016 17th IEEE International Conference on Mobile Data Management (MDM) 1, 18-27, 2016
New insights into mammalian sex chromosome structure and evolution using high-quality sequences from bovine X and Y chromosomes
R Liu, WY Low, R Tearle, S Koren, J Ghurye, A Rhie, AM Phillippy, ...
BMC genomics 20 (1), 1-11, 2019
MetaCarvel: linking assembly graph motifs to biological variants
J Ghurye, T Treangen, M Fedarko, WJ Hervey, M Pop
Genome biology 20 (1), 1-14, 2019
Better identification of repeats in metagenomic scaffolding
J Ghurye, M Pop
International Workshop on Algorithms in Bioinformatics, 174-184, 2016
Haplotype-resolved cattle genomes provide insights into structural variation and adaptation
WY Low, R Tearle, C Liu, S Koren, A Rhie, DM Bickhart, BD Rosen, ...
BioRxiv, 720797, 2019
A Succinct Four Russians Speedup for Edit Distance Computation and One-against-many Banded Alignment
B Brubach, J Ghurye
Annual Symposium on Combinatorial Pattern Matching (CPM 2018), 2018
Better greedy sequence clustering with fast banded alignment
B Brubach, J Ghurye, M Pop, A Srinivasan
17th International Workshop on Algorithms in Bioinformatics (WABI 2017), 2017
Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up …
JS Meisel, DJ Nasko, B Brubach, V Cepeda-Espinoza, J Chopyk, ...
Microbiome 6 (1), 1-10, 2018
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Artikkelit 1–20