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Francesco Asnicar
Francesco Asnicar
Department CIBIO, University of Trento
Verified email at unitn.it
Title
Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
138532019
Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle
E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ...
Cell 176 (3), 649-662. e20, 2019
11672019
Mother-to-infant microbial transmission from different body sites shapes the developing infant gut microbiome
P Ferretti, E Pasolli, A Tett, F Asnicar, V Gorfer, S Fedi, F Armanini, ...
Cell host & microbe 24 (1), 133-145. e5, 2018
9812018
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
F Beghini, LJ McIver, A Blanco-Míguez, L Dubois, F Asnicar, S Maharjan, ...
elife 10, e65088, 2021
9642021
Compact graphical representation of phylogenetic data and metadata with GraPhlAn
F Asnicar, G Weingart, TL Tickle, C Huttenhower, N Segata
PeerJ 3, e1029, 2015
692*2015
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ...
Nature medicine 25 (4), 667-678, 2019
6552019
Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals
F Asnicar, SE Berry, AM Valdes, LH Nguyen, G Piccinno, DA Drew, ...
Nature medicine 27 (2), 321-332, 2021
5672021
Human postprandial responses to food and potential for precision nutrition
SE Berry, AM Valdes, DA Drew, F Asnicar, M Mazidi, J Wolf, J Capdevila, ...
Nature medicine 26 (6), 964-973, 2020
5152020
Strain-level microbial epidemiology and population genomics from shotgun metagenomics
M Scholz, DV Ward, E Pasolli, T Tolio, M Zolfo, F Asnicar, DT Truong, ...
Nature methods 13 (5), 435-438, 2016
4062016
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ...
Nature communications 11 (1), 2500, 2020
3902020
Strain-level analysis of mother-to-child bacterial transmission during the first few months of life
M Yassour, E Jason, LJ Hogstrom, TD Arthur, S Tripathi, H Siljander, ...
Cell host & microbe 24 (1), 146-154. e4, 2018
3562018
Studying vertical microbiome transmission from mothers to infants by strain-level metagenomic profiling
F Asnicar, S Manara, M Zolfo, DT Truong, M Scholz, F Armanini, P Ferretti, ...
MSystems 2 (1), e00164-16, 2017
3232017
The Prevotella copri complex comprises four distinct clades underrepresented in westernized populations
A Tett, KD Huang, F Asnicar, H Fehlner-Peach, E Pasolli, N Karcher, ...
Cell host & microbe 26 (5), 666-679. e7, 2019
3112019
Endogenous murine microbiota member Faecalibaculum rodentium and its human homologue protect from intestinal tumour growth
E Zagato, C Pozzi, A Bertocchi, T Schioppa, F Saccheri, S Guglietta, ...
Nature microbiology 5 (3), 511-524, 2020
2892020
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ...
Nature communications 10 (1), 5477, 2019
2312019
Gut vascular barrier impairment leads to intestinal bacteria dissemination and colorectal cancer metastasis to liver
A Bertocchi, S Carloni, PS Ravenda, G Bertalot, I Spadoni, AL Cascio, ...
Cancer cell 39 (5), 708-724. e11, 2021
1952021
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
A Blanco-Míguez, F Beghini, F Cumbo, LJ McIver, KN Thompson, M Zolfo, ...
Nature Biotechnology 41 (11), 1633-1644, 2023
1932023
Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma
KA Lee, AM Thomas, LA Bolte, JR Björk, LK de Ruijter, F Armanini, ...
Nature medicine 28 (3), 535-544, 2022
1852022
Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis
A Tett, E Pasolli, S Farina, DT Truong, F Asnicar, M Zolfo, F Beghini, ...
npj Biofilms and Microbiomes 3 (1), 14, 2017
1702017
QIIME 2: reproducible, interactive, scalable, and extensible microbiome data science. PeerJ
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
Inc 6, e27295v2, 2018
1692018
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