Richard Scheltema
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Andromeda: a peptide search engine integrated into the MaxQuant environment
J Cox, N Neuhauser, A Michalski, RA Scheltema, JV Olsen, M Mann
Journal of proteome research 10 (4), 1794-1805, 2011
The Q Exactive HF, a Benchtop mass spectrometer with a pre-filter, high-performance quadrupole and an ultra-high-field Orbitrap analyzer
RA Scheltema, JP Hauschild, O Lange, D Hornburg, E Denisov, E Damoc, ...
Molecular & Cellular Proteomics 13 (12), 3698-3708, 2014
PeakML/mzMatch: a file format, Java library, R library, and tool-chain for mass spectrometry data analysis
RA Scheltema, A Jankevics, RC Jansen, MA Swertz, R Breitling
Analytical chemistry 83 (7), 2786-2793, 2011
System-wide molecular evidence for phenotypic buffering in Arabidopsis
J Fu, JJB Keurentjes, H Bouwmeester, T America, FWA Verstappen, ...
Nature genetics 41 (2), 166-167, 2009
Direct proteomic quantification of the secretome of activated immune cells
F Meissner, RA Scheltema, HJ Mollenkopf, M Mann
Science 340 (6131), 475-478, 2013
Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification
F Liu, P Lössl, R Scheltema, R Viner, AJR Heck
Nature communications 8 (1), 1-8, 2017
Time‐and compartment‐resolved proteome profiling of the extracellular niche in lung injury and repair
HB Schiller, IE Fernandez, G Burgstaller, C Schaab, RA Scheltema, ...
Molecular systems biology 11 (7), 819, 2015
Structural model of a CRISPR RNA-silencing complex reveals the RNA-target cleavage activity in Cmr4
C Benda, J Ebert, RA Scheltema, HB Schiller, M Baumgärtner, F Bonneau, ...
Molecular cell 56 (1), 43-54, 2014
Metabolomic profiling using Orbitrap Fourier transform mass spectrometry with hydrophilic interaction chromatography: a method with wide applicability to analysis of biomolecules
A Kamleh, MP Barrett, D Wildridge, RJS Burchmore, RA Scheltema, ...
Rapid Communications in Mass Spectrometry: An International Journal Devoted …, 2008
Probabilistic assignment of formulas to mass peaks in metabolomics experiments
S Rogers, RA Scheltema, M Girolami, R Breitling
Bioinformatics 25 (4), 512-518, 2009
Metabolomics to unveil and understand phenotypic diversity between pathogen populations
R t'Kindt, RA Scheltema, A Jankevics, K Brunker, S Rijal, JC Dujardin, ...
PLoS neglected tropical diseases 4 (11), e904, 2010
Spacer capture and integration by a type IF Cas1–Cas2-3 CRISPR adaptation complex
RD Fagerlund, ME Wilkinson, O Klykov, A Barendregt, FG Pearce, ...
Proceedings of the National Academy of Sciences 114 (26), E5122-E5128, 2017
Metabolomic Characterization of the Salt Stress Response in Streptomyces coelicolor
S Kol, ME Merlo, RA Scheltema, M de Vries, RJ Vonk, NA Kikkert, ...
Applied and environmental microbiology 76 (8), 2574-2581, 2010
Efficient and robust proteome-wide approaches for cross-linking mass spectrometry
O Klykov, B Steigenberger, S Pektaş, D Fasci, AJR Heck, RA Scheltema
Nature protocols 13 (12), 2964-2990, 2018
Implementation of ultraviolet photodissociation on a benchtop Q exactive mass spectrometer and its application to phosphoproteomics
KL Fort, A Dyachenko, CM Potel, E Corradini, F Marino, A Barendregt, ...
Analytical chemistry 88 (4), 2303-2310, 2016
Increasing the mass accuracy of high‐resolution LC‐MS data using background ions–a case study on the LTQ‐Orbitrap
RA Scheltema, A Kamleh, D Wildridge, C Ebikeme, DG Watson, ...
Proteomics 8 (22), 4647-4656, 2008
Simple data-reduction method for high-resolution LC–MS data in metabolomics
RA Scheltema, S Decuypere, JC Dujardin, DG Watson, RC Jansen, ...
Bioanalysis 1 (9), 1551-1557, 2009
Towards an unbiased metabolic profiling of protozoan parasites: optimisation of a Leishmania sampling protocol for HILIC-orbitrap analysis
R t’Kindt, A Jankevics, RA Scheltema, L Zheng, DG Watson, JC Dujardin, ...
Analytical and bioanalytical chemistry 398 (5), 2059-2069, 2010
A framework for intelligent data acquisition and real-time database searching for shotgun proteomics
J Graumann, RA Scheltema, Y Zhang, J Cox, M Mann
Molecular & Cellular Proteomics 11 (3), 2012
SprayQc: a real-time LC–MS/MS quality monitoring system to maximize uptime using off the shelf components
RA Scheltema, M Mann
Journal of proteome research 11 (6), 3458-3466, 2012
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