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Shilpa Garg
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
E Afgan, A Nekrutenko, BA Grüning, D Blankenberg, J Goecks, ...
Nucleic acids research 50 (W1), 2022
3761*2022
Variation graph toolkit improves read mapping by representing genetic variation in the reference
E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ...
Nature biotechnology 36 (9), 875-879, 2018
5222018
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
Nature biotechnology 38 (11), 1347-1355, 2020
320*2020
A draft human pangenome reference
WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ...
Nature 617 (7960), 312-324, 2023
3032023
WhatsHap: fast and accurate read-based phasing
M Martin, M Patterson, S Garg, S O Fischer, N Pisanti, GW Klau, ...
BioRxiv, 085050, 2016
2442016
Pangenome graphs
JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ...
Annual review of genomics and human genetics 21, 139-162, 2020
1782020
Chromosome-scale, haplotype-resolved assembly of human genomes
S Garg, A Fungtammasan, A Carroll, M Chou, A Schmitt, X Zhou, S Mac, ...
Nature biotechnology 39 (3), 309-312, 2021
154*2021
Semi-automated assembly of high-quality diploid human reference genomes
ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ...
Nature 611 (7936), 519-531, 2022
1022022
Dense and accurate whole-chromosome haplotyping of individual genomes
D Porubsky, S Garg, AD Sanders, JO Korbel, V Guryev, PM Lansdorp, ...
Nature communications 8 (1), 1293, 2017
882017
A graph-based approach to diploid genome assembly
S Garg, M Rautiainen, AM Novak, E Garrison, R Durbin, T Marschall
Bioinformatics 34 (13), i105-i114, 2018
682018
Computational methods for chromosome-scale haplotype reconstruction
S Garg
Genome biology 22 (1), 101, 2021
642021
A diploid assembly-based benchmark for variants in the major histocompatibility complex
CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ...
Nature communications 11 (1), 4794, 2020
592020
Enabling large-scale genome editing at repetitive elements by reducing DNA nicking
CJ Smith, O Castanon, K Said, V Volf, P Khoshakhlagh, A Hornick, ...
Nucleic acids research 48 (9), 5183-5195, 2020
522020
Read-based phasing of related individuals
S Garg, M Martin, T Marschall
Bioinformatics 32 (12), i234-i242, 2016
452016
Recombination between heterologous human acrocentric chromosomes
A Guarracino, S Buonaiuto, LG de Lima, T Potapova, A Rhie, S Koren, ...
Nature 617 (7960), 335-343, 2023
372023
VividhaVahana: smartphone based vehicle classification and its applications in developing region
S Garg, P Singh, P Ramanathan, R Sen
Proceedings of the 11th International Conference on Mobile and Ubiquitous …, 2014
282014
Increased mutation and gene conversion within human segmental duplications
MR Vollger, PC Dishuck, WT Harvey, WS DeWitt, X Guitart, ME Goldberg, ...
Nature 617 (7960), 325-334, 2023
272023
A haplotype-aware de novo assembly of related individuals using pedigree sequence graph
S Garg, J Aach, H Li, I Sebenius, R Durbin, G Church
Bioinformatics 36 (8), 2385-2392, 2020
272020
O Fischer
M Martin, M Patterson, S Garg
S., Pisanti, N., Klau, GW, Schöenhuth, A., & Marschall, 2016
272016
Somatic structural variant formation is guided by and influences genome architecture
N Sidiropoulos, BR Mardin, FG Rodríguez-González, ID Bochkov, S Garg, ...
Genome research 32 (4), 643-655, 2022
182022
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