Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012 | 9436 | 2012 |
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ... Nature protocols 8 (8), 1494-1512, 2013 | 7177 | 2013 |
A framework for human microbiome research nature 486 (7402), 215-221, 2012 | 2225 | 2012 |
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments BJ Haas, SL Salzberg, W Zhu, M Pertea, JE Allen, J Orvis, O White, ... Genome biology 9, 1-22, 2008 | 2178 | 2008 |
Genome Sequence of Aedes aegypti, a Major Arbovirus Vector V Nene, JR Wortman, D Lawson, B Haas, C Kodira, Z Tu, B Loftus, Z Xi, ... Science 316 (5832), 1718-1723, 2007 | 1294 | 2007 |
The TIGR rice genome annotation resource: improvements and new features S Ouyang, W Zhu, J Hamilton, H Lin, M Campbell, K Childs, ... Nucleic acids research 35 (suppl_1), D883-D887, 2007 | 1214 | 2007 |
Strains, functions and dynamics in the expanded Human Microbiome Project J Lloyd-Price, A Mahurkar, G Rahnavard, J Crabtree, J Orvis, AB Hall, ... Nature 550 (7674), 61-66, 2017 | 1029 | 2017 |
A catalog of reference genomes from the human microbiome Human Microbiome Jumpstart Reference Strains Consortium, KE Nelson, ... Science 328 (5981), 994-999, 2010 | 802 | 2010 |
Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus ND Fedorova, N Khaldi, VS Joardar, R Maiti, P Amedeo, MJ Anderson, ... PLoS genetics 4 (4), e1000046, 2008 | 568 | 2008 |
Draft genome sequence of the oilseed species Ricinus communis AP Chan, J Crabtree, Q Zhao, H Lorenzi, J Orvis, D Puiu, ... Nature biotechnology 28 (9), 951-956, 2010 | 565 | 2010 |
The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations GC Cerqueira, MB Arnaud, DO Inglis, MS Skrzypek, G Binkley, M Simison, ... Nucleic acids research 42 (D1), D705-D710, 2014 | 301 | 2014 |
Comparative cellular analysis of motor cortex in human, marmoset and mouse TE Bakken, NL Jorstad, Q Hu, BB Lake, W Tian, BE Kalmbach, M Crow, ... Nature 598 (7879), 111-119, 2021 | 267 | 2021 |
The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources MB Arnaud, GC Cerqueira, DO Inglis, MS Skrzypek, J Binkley, ... Nucleic acids research 40 (D1), D653-D659, 2012 | 180 | 2012 |
A multimodal cell census and atlas of the mammalian primary motor cortex Principal manuscript editors, Analysis coordination, ... Nature 598 (7879), 86-102, 2021 | 177 | 2021 |
Characterization of the development of the mouse cochlear epithelium at the single cell level L Kolla, MC Kelly, ZF Mann, A Anaya-Rocha, K Ellis, A Lemons, ... Nature communications 11 (1), 2389, 2020 | 152 | 2020 |
The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community MB Arnaud, MC Chibucos, MC Costanzo, J Crabtree, DO Inglis, A Lotia, ... Nucleic acids research 38 (suppl_1), D420-D427, 2010 | 137 | 2010 |
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex Z Yao, H Liu, F Xie, S Fischer, RS Adkins, AI Aldridge, SA Ament, ... Nature 598 (7879), 103-110, 2021 | 134 | 2021 |
The IGS standard operating procedure for automated prokaryotic annotation K Galens, J Orvis, S Daugherty, HH Creasy, S Angiuoli, O White, ... Standards in genomic sciences 4 (2), 244-251, 2011 | 131 | 2011 |
The Staphylococcus aureus NCTC 8325 Genome AF Gillaspy, V Worrell, J Orvis, BA Roe, DW Dyer, JJ Iandolo Gram‐Positive Pathogens, 381-412, 2006 | 130 | 2006 |
Identification of the Iron-Responsive Genes of Neisseria gonorrhoeae by Microarray Analysis in Defined Medium TF Ducey, MB Carson, J Orvis, AP Stintzi, DW Dyer Journal of bacteriology 187 (14), 4865-4874, 2005 | 124 | 2005 |