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Brandon Malone
Brandon Malone
NEC Laboratories Europe
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Cited by
Year
Structural basis for helicase-polymerase coupling in the SARS-CoV-2 replication-transcription complex
J Chen, B Malone, E Llewellyn, M Grasso, PMM Shelton, PDB Olinares, ...
Cell 182 (6), 1560-1573. e13, 2020
4102020
Structures and functions of coronavirus replication–transcription complexes and their relevance for SARS-CoV-2 drug design
B Malone, N Urakova, EJ Snijder, EA Campbell
Nature Reviews Molecular Cell Biology 23 (1), 21-39, 2022
3432022
Learning optimal Bayesian networks: A shortest path perspective
C Yuan, B Malone
Journal of Artificial Intelligence Research 48, 23-65, 2013
1952013
Learning optimal Bayesian networks using A* search
C Yuan, B Malone, X Wu
Twenty-second international joint conference on artificial intelligence, 2011
1692011
Molnupiravir: coding for catastrophe
B Malone, EA Campbell
Nature Structural & Molecular Biology 28 (9), 706-708, 2021
1662021
Empirical evaluation of scoring functions for Bayesian network model selection
Z Liu, B Malone, C Yuan
BMC bioinformatics 13 (Suppl 15), S14, 2012
1312012
Time-resolved cryo-EM using Spotiton
VP Dandey, WC Budell, H Wei, D Bobe, K Maruthi, M Kopylov, ET Eng, ...
Nature methods 17 (9), 897-900, 2020
1152020
m6A-mRNA methylation regulates cardiac gene expression and cellular growth
V Kmietczyk, E Riechert, L Kalinski, E Boileau, E Malovrh, B Malone, ...
Life science alliance 2 (2), 2019
1122019
Polycomb Group Gene OsFIE2 Regulates Rice (Oryza sativa) Seed Development and Grain Filling via a Mechanism Distinct from Arabidopsis
BRR Nallamilli, J Zhang, H Mujahid, BM Malone, SM Bridges, Z Peng
PLoS genetics 9 (3), e1003322, 2013
1002013
Structural basis for backtracking by the SARS-CoV-2 replication–transcription complex
B Malone, J Chen, Q Wang, E Llewellyn, YJ Choi, PDB Olinares, X Cao, ...
Proceedings of the National Academy of Sciences 118 (19), e2102516118, 2021
972021
Bayesian prediction of RNA translation from ribosome profiling
B Malone, I Atanassov, F Aeschimann, X Li, H Großhans, C Dieterich
Nucleic acids research 45 (6), 2960-2972, 2017
842017
Learning optimal bounded treewidth Bayesian networks via maximum satisfiability
J Berg, M Järvisalo, B Malone
Artificial Intelligence and Statistics, 86-95, 2014
722014
Artificial intelligence predicts the immunogenic landscape of SARS-CoV-2 leading to universal blueprints for vaccine designs
B Malone, B Simovski, C Moliné, J Cheng, M Gheorghe, H Fontenelle, ...
Scientific reports 10 (1), 22375, 2020
712020
Comparison of four ChIP-Seq analytical algorithms using rice endosperm H3K27 trimethylation profiling data
BM Malone, F Tan, SM Bridges, Z Peng
PloS one 6 (9), e25260, 2011
712011
Tightening bounds for Bayesian network structure learning
X Fan, C Yuan, B Malone
Proceedings of the AAAI Conference on Artificial Intelligence 28 (1), 2014
572014
An improved admissible heuristic for learning optimal Bayesian networks
C Yuan, B Malone
arXiv preprint arXiv:1210.4913, 2012
572012
Improving the scalability of optimal Bayesian network learning with external-memory frontier breadth-first branch and bound search
B Malone, C Yuan, EA Hansen, S Bridges
arXiv preprint arXiv:1202.3744, 2012
562012
Memory-efficient dynamic programming for learning optimal Bayesian networks
B Malone, C Yuan, E Hansen
Proceedings of the AAAI Conference on Artificial Intelligence 25 (1), 1057-1062, 2011
542011
Finding Optimal Bayesian Network Structures with Constraints Learned from Data.
X Fan, BM Malone, C Yuan
UAI, 200-209, 2014
532014
Monitoring cell-type–specific gene expression using ribosome profiling in vivo during cardiac hemodynamic stress
S Doroudgar, C Hofmann, E Boileau, B Malone, E Riechert, AA Gorska, ...
Circulation research 125 (4), 431-448, 2019
522019
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