| Drug repositioning based on comprehensive similarity measures and bi-random walk algorithm H Luo, J Wang, M Li, J Luo, X Peng, FX Wu, Y Pan Bioinformatics 32 (17), 2664-2671, 2016 | 403 | 2016 |
| Construction and application of dynamic protein interaction network based on time course gene expression data J Wang, X Peng, M Li, Y Pan Proteomics 13 (2), 301-312, 2013 | 161 | 2013 |
| Protein–protein interactions: detection, reliability assessment and applications X Peng, J Wang, W Peng, FX Wu, Y Pan Briefings in bioinformatics 18 (5), 798-819, 2017 | 158 | 2017 |
| Dynamic protein interaction network construction and applications J Wang, X Peng, W Peng, FX Wu Proteomics 14 (4-5), 338-352, 2014 | 115 | 2014 |
| Identifying essential proteins from active PPI networks constructed with dynamic gene expression Q Xiao, J Wang, X Peng, F Wu, Y Pan BMC genomics 16, 1-7, 2015 | 74 | 2015 |
| Rechecking the centrality-lethality rule in the scope of protein subcellular localization interaction networks X Peng, J Wang, J Wang, FX Wu, Y Pan PloS one 10 (6), e0130743, 2015 | 62 | 2015 |
| Protein interaction networks: centrality, modularity, dynamics, and applications X Meng, W Li, X Peng, Y Li, M Li Frontiers of Computer Science 15, 1-17, 2021 | 36 | 2021 |
| Mining protein complexes from PPI networks using the minimum vertex cut X Ding, WP Wang, X Peng, J Wang Tsinghua Science and Technology 17 (6), 674-681, 2012 | 33 | 2012 |
| Re-alignment of the unmapped reads with base quality score X Peng, J Wang, Z Zhang, Q Xiao, M Li, Y Pan Bmc Bioinformatics 16, 1-10, 2015 | 27 | 2015 |
| Single-cell clustering based on shared nearest neighbor and graph partitioning X Zhu, J Zhang, Y Xu, J Wang, X Peng, HD Li Interdisciplinary sciences: computational life sciences 12, 117-130, 2020 | 25 | 2020 |
| An efficient method to identify essential proteins for different species by integrating protein subcellular localization information X Peng, J Wang, J Zhong, J Luo, Y Pan 2015 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2015 | 25 | 2015 |
| De novo assembly methods for next generation sequencing data Y He, Z Zhang, X Peng, F Wu, J Wang Tsinghua Science and Technology 18 (5), 500-514, 2013 | 25 | 2013 |
| Detecting protein complexes from active protein interaction networks constructed with dynamic gene expression profiles Q Xiao, J Wang, X Peng, FX Wu Proteome science 11, 1-8, 2013 | 23 | 2013 |
| Identifying the tissues-of-origin of circulating cell-free DNAs is a promising way in noninvasive diagnostics X Peng, HD Li, FX Wu, J Wang Briefings in bioinformatics 22 (3), bbaa060, 2021 | 20 | 2021 |
| Targeted Sequencing of Genomic Repeat Regions Detects Circulating Cell-free Echinococcus DNA Z Wan, X Peng, L Ma, Q Tian, S Wu, J Li, J Ling, W Lv, B Ding, J Tan, ... PLoS neglected tropical diseases 14 (3), e0008147, 2020 | 20 | 2020 |
| Drug repositioning based on multi-view learning with matrix completion Y Yan, M Yang, H Zhao, G Duan, X Peng, J Wang Briefings in Bioinformatics 23 (3), bbac054, 2022 | 18 | 2022 |
| Active protein interaction network and its application on protein complex detection J Wang, X Peng, M Li, Y Luo, Y Pan 2011 IEEE International Conference on Bioinformatics and Biomedicine, 37-42, 2011 | 17 | 2011 |
| An effective method for refining predicted protein complexes based on protein activity and the mechanism of protein complex formation J Wang, X Peng, Q Xiao, M Li, Y Pan BMC systems biology 7, 1-12, 2013 | 15 | 2013 |
| An energy-efficient and relay hop bounded mobile data gathering algorithm in wireless sensor networks L Chen, J Wang, X Peng, X Kui International Journal of Distributed Sensor Networks 11 (5), 680301, 2015 | 11 | 2015 |
| Detecting protein complex based on hierarchical compressing network embedding X Meng, X Peng, FX Wu, M Li 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2019 | 10 | 2019 |
