| A comprehensive benchmark of kernel methods to extract protein–protein interactions from literature D Tikk, P Thomas, P Palaga, J Hakenberg, U Leser PLoS computational biology 6 (7), e1000837, 2010 | 201 | 2010 |
| Ras-mediated deregulation of the circadian clock in cancer A Relogio, P Thomas, P Medina-Perez, S Reischl, S Bervoets, E Gloc, ... PLoS Genet 10 (5), e1004338, 2014 | 124 | 2014 |
| BioCreative III interactive task: an overview C Arighi, P Roberts, S Agarwal, S Bhattacharya, G Cesareni, ... BMC Bioinformatics 12 (Suppl 8), S4, 2011 | 95 | 2011 |
| GeneView: a comprehensive semantic search engine for PubMed P Thomas, J Starlinger, A Vowinkel, S Arzt, U Leser Nucleic acids research 40 (W1), W585-W591, 2012 | 89 | 2012 |
| Relation Extraction for Drug-Drug Interactions using Ensemble Learning P Thomas, M Neves, I Solt, D Tikk, U Leser DDIExtraction2011: First Challenge Task: Drug-Drug Interaction Extraction at …, 2011 | 75 | 2011 |
| WBI-DDI: Drug-Drug Interaction Extraction using Majority Voting P Thomas, M Neves, T Rocktäschel, U Leser, U den Linden SemEval, 2013 | 62 | 2013 |
| Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers P Thomas, R Klinger, L Furlong, M Hofmann-Apitius, C Friedrich BMC Bioinformatics 12 (Suppl 4), S4, 2011 | 54 | 2011 |
| A detailed error analysis of 13 kernel methods for protein-protein interaction extraction D Tikk, I Solt, P Thomas, U Leser BMC bioinformatics 14 (1), 1-20, 2013 | 35 | 2013 |
| Improving Distantly Supervised Extraction of Drug-Drug and Protein-Protein Interactions T Bobic, R Klinger, P Thomas, M Hofmann-Apitius, S Birlinghoven, ... ROBUS-UNSUP 2012: Joint Workshop on Unsupervised and Semi-Supervised …, 2012 | 31 | 2012 |
| Findings of the wmt 2017 biomedical translation shared task AJ Yepes, A Névéol, M Neves, K Verspoor, O Bojar, A Boyer, C Grozea, ... Proceedings of the Second Conference on Machine Translation, 234-247, 2017 | 30 | 2017 |
| SETH detects and normalizes genetic variants in text P Thomas, T Rocktäschel, J Hakenberg, Y Lichtblau, U Leser Bioinformatics 32 (18), 2883-2885, 2016 | 29 | 2016 |
| Assembly of a comprehensive regulatory network for the mammalian circadian clock: a bioinformatics approach R Lehmann, L Childs, P Thomas, M Abreu, L Fuhr, H Herzel, U Leser, ... PloS one 10 (5), e0126283, 2015 | 29 | 2015 |
| Not all links are equal: exploiting dependency types for the extraction of protein-protein interactions from text P Thomas, S Pietschmann, I Solt, D Tikk, U Leser BioNLP 2011 Workshop, 2011, 1, 2011 | 25 | 2011 |
| Classical Hodgkin lymphoma shows epigenetic features of an abortive plasma cellular differentiation V Seitz, PE Thomas, K Zimmermann, U Paul, A Ehlers, M Joosten, ... Haematologica, haematol. 2010.031138 v1, 2011 | 23 | 2011 |
| Integrating 400 million variants from 80,000 human samples with extensive annotations: towards a knowledge base to analyze disease cohorts J Hakenberg, WY Cheng, P Thomas, YC Wang, AV Uzilov, R Chen BMC bioinformatics 17 (1), 1-13, 2016 | 21 | 2016 |
| Learning protein–protein interaction extraction using distant supervision P Thomas, I Solt, R Klinger, U Leser Proceedings of Workshop on Robust Unsupervised and Semisupervised Methods in …, 2011 | 20 | 2011 |
| Computer-assisted curation of a human regulatory core network from the biological literature P Thomas, P Durek, I Solt, B Klinger, F Witzel, P Schulthess, Y Mayer, ... Bioinformatics 31 (8), 1258-1266, 2015 | 16 | 2015 |
| Weakly Labeled Corpora as Silver Standard for Drug-Drug and Protein-Protein Interaction P Thomas, T Bobic, M Hofmann-Apitius, U Leser, R Klinger Third Workshop on Building and Evaluating Resources for Biomedical Text …, 2012 | 16 | 2012 |
| Extended feature set for chemical named entity recognition and indexing T Huber, T Rocktäschel, M Weidlich, P Thomas, U Leser BioCreative Challenge Evaluation Workshop 2, 88, 2013 | 15 | 2013 |
| Clickbait identification using neural networks P Thomas arXiv preprint arXiv:1710.08721, 2017 | 14 | 2017 |
Ulf LeserKnowledge Management in Bioinformatics, Humboldt-Universität zu BerlinVerified email at informatik.hu-berlin.de
