Alex Gavryushkin

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Niko BeerenwinkelProfessor of Computational Biology, ETH ZurichVerified email at bsse.ethz.ch
Lisa LambertiETHZVerified email at bsse.ethz.ch
Alexei J. DrummondProfessor of Computational Biology, University of AucklandVerified email at cs.auckland.ac.nz
Benjamin ObadiaFormer Postdoctoral Research Fellow, University of California, BerkeleyVerified email at berkeley.edu
Jean CarlsonUniversity of California Santa BarbaraVerified email at ucsb.edu
Alison GouldCalifornia Academy of SciencesVerified email at calacademy.org
Bakh KhoussainovProfessor, The Algorithms and Logic Group (ALG), UESTCVerified email at uestc.edu.cn
William B LudingtonPrincipal Investigator, Carnegie Institution for Science, Dept EmbryologyVerified email at carnegiescience.edu
Eric W. JonesBanting and PIMS Postdoctoral Fellow, Physics Dept @ Simon Fraser UniversityVerified email at sfu.ca
Vivian ZhangUC BerkeleyVerified email at berkeley.edu
Lena ColliennePostdoc, Fred Hutch Cancer CenterVerified email at fredhutch.org
Zakhar PopovEmanuel Institute of Biochemical Physics RASVerified email at iph.krasn.ru
Pavel GavryushkinSobolev Institute of Geology and MineralogyVerified email at igm.nsc.ru
Jiamou LiuThe University of AucklandVerified email at auckland.ac.nz
Konstantin LitasovInstitute for High Pressure Physics, Moscow, RussiaVerified email at hppi.troitsk.ru
Frank StephanNational University of SingaporeVerified email at comp.nus.edu.sg
Jiří C. MoravecMassey UniversityVerified email at mail.muni.cz
Denise KühnertMax Planck Institute for the Science of Human HistoryVerified email at shh.mpg.de
Timothy G VaughanDepartment of Biosystems Science and Engineering, ETH Zürich, SwitzerlandVerified email at bsse.ethz.ch
Gabriel E LeventhalCSO / Head of R&D, PharmaBiome AG, SwitzerlandVerified email at pharmabiome.com

Alex Gavryushkin

Associate Professor of Data Science, University of Canterbury

Verified email at canterbury.ac.nz - Homepage

Algorithms Mathematical Biology Phylogenomics


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Microbiome interactions shape host fitness AL Gould, V Zhang, L Lamberti, EW Jones, B Obadia, N Korasidis, ... Proceedings of the National Academy of Sciences 115 (51), E11951-E11960, 2018	390	2018
The space of ultrametric phylogenetic trees A Gavryushkin, AJ Drummond Journal of theoretical biology 403, 197-208, 2016	49	2016
How well can the exponential-growth coalescent approximate constant-rate birth–death population dynamics? T Stadler, TG Vaughan, A Gavryushkin, S Guindon, D Kühnert, ... Proceedings of the Royal Society B: Biological Sciences 282 (1806), 20150420, 2015	38	2015
Inferring Genetic Interactions From Comparative Fitness Data K Crona, A Gavryushkin, D Greene, N Beerenwinkel eLife 6 (e28629), 2017	33	2017
Graphs realised by re equivalence relations A Gavruskin, S Jain, B Khoussainov, F Stephan Annals of Pure and Applied Logic 165 (7), 1263-1290, 2014	29	2014
Reducibilities among equivalence relations induced by recursively enumerable structures A Gavryushkin, B Khoussainov, F Stephan Theoretical Computer Science 612, 137-152, 2016	28	2016
Complexity of Ehrenfeucht models. AN Gavryushkin Algebra & Logic 45 (5), 2006	20*	2006
Toward Analysis of Structural Changes Common for Alkaline Carbonates and Binary Compounds: Prediction of High-Pressure Structures of Li₂CO₃, Na₂CO₃, and K₂CO … PN Gavryushkin, A Behtenova, ZI Popov, VV Bakakin, AY Likhacheva, ... Crystal Growth & Design 16 (10), 5612-5617, 2016	18	2016
Spectra of computable models for Ehrenfeucht theories AN Gavryushkin Algebra and Logic 46 (3), 149-157, 2007	18*	2007
Computing nearest neighbour interchange distances between ranked phylogenetic trees L Collienne, A Gavryushkin Journal of Mathematical Biology 82 (1-2), 8, 2021	16	2021
Dynamic algorithms for monotonic interval scheduling problem A Gavruskin, B Khoussainov, M Kokho, J Liu Theoretical Computer Science 562, 227-242, 2015	14*	2015
On constructive models of theories with linear Rudin-Keisler ordering A Gavryushkin Journal of Logic and Computation, exq043, 2010	14*	2010
The combinatorics of discrete time-trees: theory and open problems A Gavryushkin, C Whidden, F Matsen Journal of Mathematical Biology 76 (5), 1101-1121, 2017	13	2017
Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software PP Gardner, JM Paterson, S McGimpsey, F Ashari-Ghomi, SU Umu, ... Genome biology 23 (1), 1-13, 2022	10*	2022
Stability of B2‐type FeS at Earth's inner core pressures PN Gavryushkin, ZI Popov, KD Litasov, AB Belonoshko, A Gavryushkin Geophysical Research Letters 43 (16), 8435-8440, 2016	10	2016
Computable limit models АN Gavryushkin Известия Иркутского государственного университета. Серия: Математика 2 (2 …, 2009	10	2009
The geometry of partial fitness orders and an efficient method for detecting genetic interactions C Lienkaemper, L Lamberti, J Drain, N Beerenwinkel, A Gavryushkin Journal of mathematical biology 77, 951-970, 2018	8	2018
Testing for phylogenetic signal in single-cell RNA-seq data JC Moravec, R Lanfear, DL Spector, SD Diermeier, A Gavryushkin Journal of Computational Biology 30 (4), 518-537, 2023	7*	2023
Computable models of Ehrenfeucht theories A Gavryushkin The Infinity Project, 67, 2012	7	2012
Learning epistatic gene interactions from perturbation screens K Elmes, F Schmich, E Szczurek, J Jenkins, N Beerenwinkel, ... Plos one 16 (7), e0254491, 2021	5	2021

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