Ann Loraine
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The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets
JW Nicol, GA Helt, SG Blanchard Jr, A Raja, AE Loraine
Bioinformatics 25 (20), 2730-2731, 2009
NetAffx: affymetrix probeset annotations
G Liu, AE Loraine, R Shigeta, M Cline, J Cheng, SA Chervitz, D Kulp, ...
Proceedings of the 2002 ACM symposium on Applied computing, 147-150, 2002
Integrated genome browser: visual analytics platform for genomics
NH Freese, DC Norris, AE Loraine
Bioinformatics 32 (14), 2089-2095, 2016
Identification of cytokinin-responsive genes using microarray meta-analysis and RNA-Seq in Arabidopsis
A Bhargava, I Clabaugh, JP To, BB Maxwell, YH Chiang, GE Schaller, ...
Plant Physiology 162 (1), 272-294, 2013
RNA-seq of Arabidopsis pollen uncovers novel transcription and alternative splicing
AE Loraine, S McCormick, A Estrada, K Patel, P Qin
Plant physiology 162 (2), 1092-1109, 2013
Transcriptional coordination of the metabolic network in Arabidopsis
H Wei, S Persson, T Mehta, V Srinivasasainagendra, L Chen, GP Page, ...
Plant physiology 142 (2), 762-774, 2006
Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm
M Mutwil, B Usadel, M Schuݶtte, A Loraine, O Ebenhoݶh, S Persson
Plant physiology 152 (1), 29-43, 2010
Large‐scale transposon mutagenesis of Mycoplasma pulmonis
CT French, P Lao, AE Loraine, BT Matthews, H Yu, K Dybvig
Molecular microbiology 69 (1), 67-76, 2008
RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage …
MALAEL Vikas Gupta, April D Estrada, Ivory Blakley, Rob Reid, Ketan Patel ...
GigaScience 4 (5), 2015
Cytokinin induces genome-wide binding of the type-B response regulator ARR10 to regulate growth and development in Arabidopsis
YO Zubo, IC Blakley, MV Yamburenko, JM Worthen, IH Street, ...
Proceedings of the National Academy of Sciences 114 (29), E5995-E6004, 2017
CressExpress: a tool for large-scale mining of expression data from Arabidopsis
V Srinivasasainagendra, GP Page, T Mehta, I Coulibaly, AE Loraine
Plant physiology 147 (3), 1004-1016, 2008
A regulon conserved in monocot and dicot plants defines a functional module in antifungal plant immunity
M Humphry, P Bednarek, B Kemmerling, S Koh, M Stein, U Göbel, ...
Proceedings of the National Academy of Sciences 107 (50), 21896-21901, 2010
Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems
R Liu, AE Loraine, JA Dickerson
BMC bioinformatics 15 (1), 1-16, 2014
Efficient quantification of the health-relevant anthocyanin and phenolic acid profiles in commercial cultivars and breeding selections of blueberries (Vaccinium spp.)
GG Yousef, AF Brown, Y Funakoshi, F Mbeunkui, MH Grace, ...
Journal of Agricultural and Food Chemistry 61 (20), 4806-4815, 2013
COBRA-LIKE2, a member of the glycosylphosphatidylinositol-anchored COBRA-LIKE family, plays a role in cellulose deposition in Arabidopsis seed coat mucilage secretory cells
D Ben-Tov, Y Abraham, S Stav, K Thompson, A Loraine, R Elbaum, ...
Plant Physiology 167 (3), 711-724, 2015
Analysis and visualization of RNA-Seq expression data using RStudio, Bioconductor, and Integrated Genome Browser
AE Loraine, IC Blakley, S Jagadeesan, J Harper, G Miller, N Firon
Plant Functional Genomics: Methods and Protocols, 481-501, 2015
Tomato Rab1A homologs as molecular tools for studying Rab geranylgeranyl transferase in plant cells
AE Loraine, S Yalovsky, S Fabry, W Gruissem
Plant Physiology 110 (4), 1337-1347, 1996
Mining Arabidopsis thaliana RNA‐seq data with Integrated Genome Browser reveals stress‐induced alternative splicing of the putative splicing regulator SR45a
AA Gulledge, AD Roberts, H Vora, K Patel, AE Loraine
American journal of botany 99 (2), 219-231, 2012
MARA: a novel approach for highly multiplexed locus-specific SNP genotyping using high-density DNA oligonucleotide arrays
MH Shapero, J Zhang, A Loraine, W Liu, X Di, G Liu, KW Jones
Nucleic Acids Research 32 (22), e181-e181, 2004
Coordination of chloroplast development through the action of the GNC and GLK transcription factor families
YO Zubo, IC Blakley, JM Franco-Zorrilla, MV Yamburenko, R Solano, ...
Plant physiology 178 (1), 130-147, 2018
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