| The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets JW Nicol, GA Helt, SG Blanchard Jr, A Raja, AE Loraine Bioinformatics 25 (20), 2730-2731, 2009 | 695 | 2009 |
| NetAffx: affymetrix probeset annotations G Liu, AE Loraine, R Shigeta, M Cline, J Cheng, SA Chervitz, D Kulp, ... Proceedings of the 2002 ACM symposium on Applied computing, 147-150, 2002 | 626 | 2002 |
| Integrated genome browser: visual analytics platform for genomics NH Freese, DC Norris, AE Loraine Bioinformatics 32 (14), 2089-2095, 2016 | 307 | 2016 |
| Identification of cytokinin-responsive genes using microarray meta-analysis and RNA-Seq in Arabidopsis A Bhargava, I Clabaugh, JP To, BB Maxwell, YH Chiang, GE Schaller, ... Plant Physiology 162 (1), 272-294, 2013 | 230 | 2013 |
| RNA-seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AE Loraine, S McCormick, A Estrada, K Patel, P Qin Plant physiology 162 (2), 1092-1109, 2013 | 218 | 2013 |
| Transcriptional coordination of the metabolic network in Arabidopsis H Wei, S Persson, T Mehta, V Srinivasasainagendra, L Chen, GP Page, ... Plant physiology 142 (2), 762-774, 2006 | 215 | 2006 |
| Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm M Mutwil, B Usadel, M Schuݶtte, A Loraine, O Ebenhoݶh, S Persson Plant physiology 152 (1), 29-43, 2010 | 183 | 2010 |
| Large‐scale transposon mutagenesis of Mycoplasma pulmonis CT French, P Lao, AE Loraine, BT Matthews, H Yu, K Dybvig Molecular microbiology 69 (1), 67-76, 2008 | 149 | 2008 |
| RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage … MALAEL Vikas Gupta, April D Estrada, Ivory Blakley, Rob Reid, Ketan Patel ... GigaScience 4 (5), 2015 | 138 | 2015 |
| Cytokinin induces genome-wide binding of the type-B response regulator ARR10 to regulate growth and development in Arabidopsis YO Zubo, IC Blakley, MV Yamburenko, JM Worthen, IH Street, ... Proceedings of the National Academy of Sciences 114 (29), E5995-E6004, 2017 | 135 | 2017 |
| CressExpress: a tool for large-scale mining of expression data from Arabidopsis V Srinivasasainagendra, GP Page, T Mehta, I Coulibaly, AE Loraine Plant physiology 147 (3), 1004-1016, 2008 | 132 | 2008 |
| A regulon conserved in monocot and dicot plants defines a functional module in antifungal plant immunity M Humphry, P Bednarek, B Kemmerling, S Koh, M Stein, U Göbel, ... Proceedings of the National Academy of Sciences 107 (50), 21896-21901, 2010 | 115 | 2010 |
| Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems R Liu, AE Loraine, JA Dickerson BMC bioinformatics 15 (1), 1-16, 2014 | 107 | 2014 |
| Efficient quantification of the health-relevant anthocyanin and phenolic acid profiles in commercial cultivars and breeding selections of blueberries (Vaccinium spp.) GG Yousef, AF Brown, Y Funakoshi, F Mbeunkui, MH Grace, ... Journal of Agricultural and Food Chemistry 61 (20), 4806-4815, 2013 | 106 | 2013 |
| COBRA-LIKE2, a member of the glycosylphosphatidylinositol-anchored COBRA-LIKE family, plays a role in cellulose deposition in Arabidopsis seed coat mucilage secretory cells D Ben-Tov, Y Abraham, S Stav, K Thompson, A Loraine, R Elbaum, ... Plant Physiology 167 (3), 711-724, 2015 | 81 | 2015 |
| Analysis and visualization of RNA-Seq expression data using RStudio, Bioconductor, and Integrated Genome Browser AE Loraine, IC Blakley, S Jagadeesan, J Harper, G Miller, N Firon Plant Functional Genomics: Methods and Protocols, 481-501, 2015 | 78 | 2015 |
| Tomato Rab1A homologs as molecular tools for studying Rab geranylgeranyl transferase in plant cells AE Loraine, S Yalovsky, S Fabry, W Gruissem Plant Physiology 110 (4), 1337-1347, 1996 | 74 | 1996 |
| Mining Arabidopsis thaliana RNA‐seq data with Integrated Genome Browser reveals stress‐induced alternative splicing of the putative splicing regulator SR45a AA Gulledge, AD Roberts, H Vora, K Patel, AE Loraine American journal of botany 99 (2), 219-231, 2012 | 66 | 2012 |
| MARA: a novel approach for highly multiplexed locus-specific SNP genotyping using high-density DNA oligonucleotide arrays MH Shapero, J Zhang, A Loraine, W Liu, X Di, G Liu, KW Jones Nucleic Acids Research 32 (22), e181-e181, 2004 | 60 | 2004 |
| Coordination of chloroplast development through the action of the GNC and GLK transcription factor families YO Zubo, IC Blakley, JM Franco-Zorrilla, MV Yamburenko, R Solano, ... Plant physiology 178 (1), 130-147, 2018 | 58 | 2018 |
Ivory Clabaugh BlakleyResearch Specialist, University of North Carolina at Charlotte, department of Bioinformatics andVerified email at uncc.edu
