| Hybrid cloud and cluster computing paradigms for life science applications J Qiu, J Ekanayake, T Gunarathne, JY Choi, SH Bae, H Li, B Zhang, ... BMC bioinformatics 11, 1-6, 2010 | 101 | 2010 |
| Improving resource utilization in mapreduce Z Guo, G Fox, M Zhou, Y Ruan 2012 IEEE International Conference on Cluster Computing, 402-410, 2012 | 58 | 2012 |
| Applying twister to scientific applications B Zhang, Y Ruan, TL Wu, J Qiu, A Hughes, G Fox 2010 IEEE Second International Conference on Cloud Computing Technology and …, 2010 | 52 | 2010 |
| Harp: Collective communication on hadoop B Zhang, Y Ruan, J Qiu 2015 IEEE International Conference on Cloud Engineering, 228-233, 2015 | 46 | 2015 |
| Phylogenetically structured differences in rRNA gene sequence variation among species of arbuscular mycorrhizal fungi and their implications for sequence clustering GL House, S Ekanayake, Y Ruan, UME Schütte, W Kaonongbua, G Fox, ... Applied and Environmental Microbiology 82 (16), 4921-4930, 2016 | 43 | 2016 |
| DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences Y Ruan, S Ekanayake, M Rho, H Tang, SH Bae, J Qiu, G Fox Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012 | 30 | 2012 |
| Data intensive computing for bioinformatics J Qiu, J Ekanayake, T Gunarathne, JY Choi, SH Bae, Y Ruan, ... Data Intensive Distributed Computing: Challenges and Solutions for Large …, 2012 | 25 | 2012 |
| Integration of clustering and multidimensional scaling to determine phylogenetic trees as spherical phylograms visualized in 3 dimensions Y Ruan, GL House, S Ekanayake, U Schütte, JD Bever, H Tang, G Fox 2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2014 | 22 | 2014 |
| A robust and scalable solution for interpolative multidimensional scaling with weighting Y Ruan, G Fox 2013 IEEE 9th International Conference on e-Science, 61-69, 2013 | 22 | 2013 |
| Applicability of DryadLINQ to scientific applications J Ekanayake, T Gunarathne, J Qiu, G Fox, S Beason, JY Choi, Y Ruan, ... Community Grids Laboratory, Indiana University, 2010 | 18 | 2010 |
| Visualizing the protein sequence universe L Stanberry, R Higdon, W Haynes, N Kolker, W Broomall, S Ekanayake, ... Proceedings of the 3rd international workshop on Emerging computational …, 2012 | 14 | 2012 |
| Hymr: a hybrid mapreduce workflow system Y Ruan, Z Guo, Y Zhou, J Qiu, G Fox Proceedings of the 3rd international workshop on Emerging computational …, 2012 | 13 | 2012 |
| Interpolative multidimensional scaling techniques for the identification of clusters in very large sequence sets A Hughes, Y Ruan, S Ekanayake, SH Bae, Q Dong, M Rho, J Qiu, G Fox BMC bioinformatics 13, 1-6, 2012 | 12 | 2012 |
| Design patterns for scientific applications in DryadLINQ CTP H Li, Y Ruan, Y Zhou, J Qiu, G Fox Proceedings of the second international workshop on Data intensive computing …, 2011 | 9 | 2011 |
| Map-reduce expansion of the ISGA genomic analysis web server C Hemmerich, A Hughes, Y Ruan, A Buechlein, J Qiu, G Fox IEEE CloudCom, 2010 | 4 | 2010 |
| Design Patterns for Scientific Applications in DryadLINQ CTP, to appear in Proceedings of The Second International Workshop on Data Intensive Computing in the Clouds (DataCloud … H Li, Y Ruan, Y Zhou, J Qiu, G Fox The International Conference for High Performance Computing, Networking …, 2011 | 3 | 2011 |
| Salsa project: Parallel data mining of gis, web, medical, physics, chemical, and biology data X Qiu, G Fox, SH Bae, JY Choi, J Ekanayake, Y Ruan 2008 IEEE Fourth International Conference on eScience, 335-336, 2008 | 2 | 2008 |
| Scalable and robust clustering and visualization for large-scale bioinformatics data Y Ruan Indiana University, 2014 | 1 | 2014 |
| SCALABLE AND ROBUST DIMENSION REDUCTION AND CLUSTERING Y Ruan | | |
| Hybrid MapReduce Workflow Y Ruan, Z Guo, Y Zhou, J Qiu, G Fox | | |
Geoffrey FoxProfessor of Computer Science, University of Virginia, Biocomplexity InstituteVerified email at virginia.edu
