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Yuankun Zhu
Yuankun Zhu
Bioinformatics Engineer, The Children's Hospital Of Philadelphia
Verified email at email.chop.edu
Title
Cited by
Cited by
Year
Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome
Z Peng, Y Cheng, BCM Tan, L Kang, Z Tian, Y Zhu, W Zhang, Y Liang, ...
Nature biotechnology 30 (3), 253-260, 2012
5752012
The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution
O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ...
Cell 181 (2), 236-249, 2020
3822020
MYB-QKI rearrangements in angiocentric glioma drive tumorigenicity through a tripartite mechanism
P Bandopadhayay, LA Ramkissoon, P Jain, G Bergthold, J Wala, R Zeid, ...
Nature genetics 48 (3), 273-282, 2016
2692016
Integrated proteogenomic characterization across major histological types of pediatric brain cancer
F Petralia, N Tignor, B Reva, M Koptyra, S Chowdhury, D Rykunov, A Krek, ...
Cell 183 (7), 1962-1985. e31, 2020
2072020
A pilot precision medicine trial for children with diffuse intrinsic pontine glioma—PNOC003: A report from the Pacific Pediatric Neuro‐Oncology Consortium
S Mueller, P Jain, WS Liang, L Kilburn, C Kline, N Gupta, E Panditharatna, ...
International journal of cancer 145 (7), 1889-1901, 2019
1092019
Overcoming resistance to single-agent therapy for oncogenic BRAF gene fusions via combinatorial targeting of MAPK and PI3K/mTOR signaling pathways
P Jain, A Silva, HJ Han, SS Lang, Y Zhu, K Boucher, TE Smith, A Vakil, ...
Oncotarget 8 (49), 84697, 2017
462017
Intratumoral genetic and functional heterogeneity in pediatric glioblastoma
M Hoffman, AH Gillmor, DJ Kunz, MJ Johnston, A Nikolic, K Narta, ...
Cancer research 79 (9), 2111-2123, 2019
422019
Pediatric high-grade glioma resources from the Children’s Brain Tumor Tissue Consortium
H Ijaz, M Koptyra, KS Gaonkar, JL Rokita, VP Baubet, L Tauhid, Y Zhu, ...
Neuro-oncology 22 (1), 163-165, 2020
352020
Transcriptome signatures associated with meningioma progression
AN Viaene, B Zhang, M Martinez-Lage, C Xiang, U Tosi, JP Thawani, ...
Acta neuropathologica communications 7, 1-13, 2019
342019
The children's brain tumor network (CBTN)-Accelerating research in pediatric central nervous system tumors through collaboration and open science
JV Lilly, JL Rokita, JL Mason, T Patton, S Stefankiewiz, D Higgins, ...
Neoplasia 35, 100846, 2023
282023
Association of a functional Claudin-5 variant with schizophrenia in female patients with the 22q11. 2 deletion syndrome
Y Guo, LN Singh, Y Zhu, RE Gur, A Resnick, SA Anderson, JI Alvarez
Schizophrenia research 215, 451, 2020
152020
OpenPBTA: The Open Pediatric Brain Tumor Atlas
JA Shapiro, KS Gaonkar, SJ Spielman, CL Savonen, CJ Bethell, R Jin, ...
Cell genomics 3 (7), 2023
12*2023
MitoScape: A big-data, machine-learning platform for obtaining mitochondrial DNA from next-generation sequencing data
LN Singh, B Ennis, B Loneragan, NL Tsao, MIG Lopez Sanchez, J Li, ...
PLoS Computational Biology 17 (11), e1009594, 2021
122021
Children’s Brain Tumor Network; Clinical Proteomic Tumor Analysis Consortium. Integrated proteogenomic characterization across major histological types of pediatric brain cancer
F Petralia, N Tignor, B Reva, M Koptyra, S Chowdhury, D Rykunov, A Krek, ...
Cell 183 (7), 1962-1985, 2020
92020
Gabriella Miller Kids First Data Resource Center: Harmonizing clinical and genomic data to support childhood cancer and structural birth defect research
AP Heath, DM Taylor, Y Zhu, P Raman, J Lilly, P Storm, AJ Waanders, ...
Cancer Research 79 (13_Supplement), 2464-2464, 2019
82019
annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions
KS Gaonkar, F Marini, KS Rathi, P Jain, Y Zhu, NA Chimicles, MA Brown, ...
BMC bioinformatics 21, 1-21, 2020
72020
OpenPBTA: an open pediatric brain tumor atlas
JA Shapiro, KS Gaonkar, CL Savonen, SJ Spielman, CJ Bethell, R Jin, ...
bioRxiv, 2022.09. 13.507832, 2022
62022
Pediatric high grade glioma resources from the children’s brain tumor tissue consortium (CBTTC) and pediatric brain tumor atlas (PBTA)
H Ijaz, M Koptyra, KS Gaonkar, JL Rokita, VP Baubet, L Tauhid, Y Zhu, ...
bioRxiv, 656587, 2019
62019
Ancestry and frequency of genetic variants in the general population are confounders in the characterization of germline variants linked to cancer
A Bobyn, M Zarrei, Y Zhu, M Hoffman, D Brenner, AC Resnick, ...
BMC Medical Genetics 21, 1-10, 2020
42020
Transcriptional immunogenomic analysis reveals distinct immunological clusters in paediatric nervous system tumours
A Nabbi, P Beck, A Delaidelli, DA Oldridge, S Sudhaman, K Zhu, ...
Genome Medicine 15 (1), 67, 2023
32023
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