Christopher Funk
Christopher Funk
PhD student, University of Colorado Medical School
Verified email at ucdenver.edu
Title
Cited by
Cited by
Year
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
6972013
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 1-19, 2016
2362016
A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools
K Verspoor, KB Cohen, A Lanfranchi, C Warner, HL Johnson, C Roeder, ...
BMC bioinformatics 13 (1), 207, 2012
1002012
Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters
C Funk, W Baumgartner, B Garcia, C Roeder, M Bada, KB Cohen, ...
BMC bioinformatics 15 (1), 59, 2014
942014
Combining heterogeneous data sources for accurate functional annotation of proteins
A Sokolov, C Funk, K Graim, K Verspoor, A Ben-Hur
BMC bioinformatics 14 (S3), S10, 2013
602013
Evaluating a variety of text-mined features for automatic protein function prediction with GOstruct
CS Funk, I Kahanda, A Ben-Hur, KM Verspoor
Journal of biomedical semantics 6 (1), 9, 2015
292015
The colorado richly annotated full text (craft) corpus: Multi-model annotation in the biomedical domain
KB Cohen, K Verspoor, K Fort, C Funk, M Bada, M Palmer, LE Hunter
Handbook of Linguistic Annotation, 1379-1394, 2017
212017
PHENOstruct: Prediction of human phenotype ontology terms using heterogeneous data sources
I Kahanda, C Funk, K Verspoor, A Ben-Hur
F1000Research 4, 2015
192015
A close look at protein function prediction evaluation protocols
I Kahanda, CS Funk, F Ullah, KM Verspoor, A Ben-Hur
GigaScience 4 (1), s13742-015-0082-5, 2015
142015
Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition
CS Funk, KB Cohen, LE Hunter, KM Verspoor
Journal of biomedical semantics 7 (1), 1-16, 2016
122016
Combining heterogenous data for prediction of disease related and pharmacogenes
CS Funk, LE Hunter, KB Cohen
Biocomputing 2014, 328-339, 2014
62014
Fractional extended and unscented Kalman filtering for state of charge estimation of lithium-ion batteries
M Kupper, C Funk, M Eckert, S Hohmann
2018 Annual American Control Conference (ACC), 3855-3862, 2018
42018
Recognition and normalization of terminology from large biomedical ontologies and their application for pharmacogene and protein function prediction
CS Funk
University of Colorado Anschutz Medical Campus. Strauss Health Sciences Library, 2015
12015
Semantic precision and recall for concept annotation of text
M Bada, WA Baumgartner Jr, C Funk, LE Hunter, K Verspoor
Proceedings of Bio-Ontologies, 30-37, 2014
12014
using heterogeneous data sources [version 1; referees: 2
I Kahanda, C Funk, K Verspoor, A Ben-Hur
2015
PHENOstruct: Prediction of human phenotype ontology terms using heterogeneous data sources [version 1; referees: 2
I Kahanda, C Funk, K Verspoor, A Ben-Hur
2015
A corpus of full-text Journal Article articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools
K VERSPOOR, KB COHEN, A LANFRANCHI, C WARNER, H JOHNSON, ...
2012
Availability: This version is available at: http://porto. polito. it/2649752/since: September 2016
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Our thanks to all those who have helped with this issue of Pharmacogenomics. Listed below are authors, referees and others who have kindly given their time, effort and …
D Angiolillo, J Azuma, R Baak-Pablo, NL Benowitz, C Bischofs, JT Brandt, ...
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