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Pekka Marttinen
Pekka Marttinen
Aalto University
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Year
A survey on knowledge graphs: Representation, acquisition, and applications
S Ji, S Pan, E Cambria, P Marttinen, SY Philip
IEEE transactions on neural networks and learning systems 33 (2), 494-514, 2021
18662021
Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations
J Corander, P Marttinen, J Sirén, J Tang
BMC bioinformatics 9, 1-14, 2008
9882008
Bayesian identification of admixture events using multilocus molecular markers
J Corander, P Marttinen
Molecular ecology 15 (10), 2833-2843, 2006
7612006
Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus
N Kashtan, SE Roggensack, S Rodrigue, JW Thompson, SJ Biller, A Coe, ...
Science 344 (6182), 416-420, 2014
5772014
BAPS 2: enhanced possibilities for the analysis of genetic population structure
J Corander, P Waldmann, P Marttinen, MJ Sillanpää
Bioinformatics 20 (15), 2363-2369, 2004
5532004
Dense genomic sampling identifies highways of pneumococcal recombination
C Chewapreecha, SR Harris, NJ Croucher, C Turner, P Marttinen, ...
Nature genetics 46 (3), 305-309, 2014
3952014
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ...
Nature communications 10 (1), 2674, 2019
2702019
A Bayesian method for identification of stock mixtures from molecular marker data
J Corrander, P Marttinen, S Mäntyniemi
2392006
Comprehensive identification of single nucleotide polymorphisms associated with beta-lactam resistance within pneumococcal mosaic genes
C Chewapreecha, P Marttinen, NJ Croucher, SJ Salter, SR Harris, ...
PLoS genetics 10 (8), e1004547, 2014
2252014
Detection of recombination events in bacterial genomes from large population samples
P Marttinen, WP Hanage, NJ Croucher, TR Connor, SR Harris, ...
Nucleic acids research 40 (1), e6-e6, 2012
2142012
Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes
JA Lees, M Vehkala, N Välimäki, SR Harris, C Chewapreecha, ...
Nature Communications 7, 12797, 2016
2122016
International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact
RA Gladstone, SW Lo, JA Lees, NJ Croucher, AJ Van Tonder, J Corander, ...
EBioMedicine 43, 338-346, 2019
1602019
Cryptic ecology among host generalist Campylobacter jejuni in domestic animals
SK Sheppard, L Cheng, G Meric, CPA De Haan, AK Llarena, P Marttinen, ...
Molecular ecology 23 (10), 2442-2451, 2014
1452014
Efficient inference of recent and ancestral recombination within bacterial populations
R Mostowy, NJ Croucher, CP Andam, J Corander, WP Hanage, ...
Molecular biology and evolution 34 (5), 1167-1182, 2017
1402017
metaCCA: summary statistics-based multivariate meta-analysis of genome-wide association studies using canonical correlation analysis
A Cichonska, J Rousu, P Marttinen, AJ Kangas, P Soininen, T Lehtimäki, ...
Bioinformatics 32 (13), 1981-1989, 2016
1302016
EEG based emotion recognition: A tutorial and review
X Li, Y Zhang, P Tiwari, D Song, B Hu, M Yang, Z Zhao, N Kumar, ...
ACM Computing Surveys 55 (4), 1-57, 2022
1142022
Plasmids shaped the recent emergence of the major nosocomial pathogen Enterococcus faecium
S Arredondo-Alonso, J Top, A McNally, S Puranen, M Pesonen, J Pensar, ...
MBio 11 (1), 10.1128/mbio. 03284-19, 2020
114*2020
Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus
S Castillo-Ramírez, J Corander, P Marttinen, M Aldeljawi, WP Hanage, ...
Genome biology 13, 1-13, 2012
1082012
Deep learning for depression recognition with audiovisual cues: A review
L He, M Niu, P Tiwari, P Marttinen, R Su, J Jiang, C Guo, H Wang, S Ding, ...
Information Fusion 80, 56-86, 2022
1002022
Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis
SK Sieberts, F Zhu, J García-García, E Stahl, A Pratap, G Pandey, ...
Nature communications 7 (1), 12460, 2016
922016
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Articles 1–20