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Analysis of gene expression data using self‐organizing maps P Törönen, M Kolehmainen, G Wong, E Castrén FEBS letters 451 (2), 142-146, 1999 | 758 | 1999 |
An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17 (1), 1-19, 2016 | 359 | 2016 |
PANNZER2: a rapid functional annotation web server P Törönen, A Medlar, L Holm Nucleic acids research 46 (W1), W84-W88, 2018 | 259 | 2018 |
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20 (1), 1-23, 2019 | 251 | 2019 |
Defense‐related transcription factors WRKY70 and WRKY54 modulate osmotic stress tolerance by regulating stomatal aperture in Arabidopsis J Li, S Besseau, P Törönen, N Sipari, H Kollist, L Holm, ET Palva New Phytologist 200 (2), 457-472, 2013 | 210 | 2013 |
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PANNZER: high-throughput functional annotation of uncharacterized proteins in an error-prone environment P Koskinen, P Törönen, J Nokso-Koivisto, L Holm Bioinformatics 31 (10), 1544-1552, 2015 | 140 | 2015 |
Revised Phylogeny and Novel Horizontally Acquired Virulence Determinants of the Model Soft Rot Phytopathogen Pectobacterium wasabiae SCC3193 J Nykyri, O Niemi, P Koskinen, J Nokso-Koivisto, M Pasanen, M Broberg, ... PLoS Pathogens 8 (11), e1003013, 2012 | 117 | 2012 |
Changes in gene expression in atherosclerotic plaques analyzed using DNA array MO Hiltunen, TT Tuomisto, M Niemi, JH Bräsen, TT Rissanen, P Törönen, ... Atherosclerosis 165 (1), 23-32, 2002 | 109 | 2002 |
AAI-profiler: fast proteome-wide exploratory analysis reveals taxonomic identity, misclassification and contamination AJ Medlar, P Törönen, L Holm Nucleic acids research 46 (W1), W479-W485, 2018 | 106 | 2018 |
Antipsychotic drug treatment induces differential gene expression in the rat cortex O Kontkanen, P Törönen, M Lakso, G Wong, E Castrén Journal of neurochemistry 83 (5), 1043-1053, 2002 | 98 | 2002 |
Theme discovery from gene lists for identification and viewing of multiple functional groups P Pehkonen, G Wong, P Törönen BMC bioinformatics 6 (1), 1-18, 2005 | 73 | 2005 |
Selection of informative clusters from hierarchical cluster tree with gene classes P Toronen BMC bioinformatics 5, 1-19, 2004 | 67 | 2004 |
Bayesian search of functionally divergent protein subgroups and their function specific residues P Marttinen, J Corander, P Törönen, L Holm Bioinformatics 22 (20), 2466-2474, 2006 | 63 | 2006 |
Robust extraction of functional signals from gene set analysis using a generalized threshold free scoring function P Törönen, PJ Ojala, P Marttinen, L Holm BMC bioinformatics 10 (1), 1-27, 2009 | 48 | 2009 |
Analysis and visualization of gene expression data using self-organizing maps S Kaski, J Nikkilä, P Törönen, E Castren, G Wong | 39 | 2001 |
Brain‐derived neurotrophic factor signaling modifies hippocampal gene expression during epileptogenesis in transgenic mice S Lähteinen, A Pitkänen, J Knuuttila, P Törönen, E Castrén European Journal of Neuroscience 19 (12), 3245-3254, 2004 | 37 | 2004 |
Effects of antidepressant drug imipramine on gene expression in rat prefrontal cortex JEA Knuuttila, P Törönen, E Castrén Neurochemical Research 29, 1235-1244, 2004 | 31 | 2004 |