| Human gut colonisation may be initiated in utero by distinct microbial communities in the placenta and amniotic fluid MC Collado, S Rautava, J Aakko, E Isolauri, S Salminen Scientific reports 6 (1), 1-13, 2016 | 1209 | 2016 |
| Distinct patterns in human milk microbiota and fatty acid profiles across specific geographic locations H Kumar, E Du Toit, A Kulkarni, J Aakko, KM Linderborg, Y Zhang, ... Frontiers in microbiology 7, 1619, 2016 | 246 | 2016 |
| Human milk oligosaccharide categories define the microbiota composition in human colostrum J Aakko, H Kumar, S Rautava, A Wise, C Autran, L Bode, E Isolauri, ... Beneficial microbes 8 (4), 563-567, 2017 | 136 | 2017 |
| Accurate deep learning-based sleep staging in a clinical population with suspected obstructive sleep apnea H Korkalainen, J Aakko, S Nikkonen, S Kainulainen, A Leino, B Duce, ... IEEE journal of biomedical and health informatics 24 (7), 2073-2081, 2019 | 126 | 2019 |
| Probiotic cheese containing Lactobacillus rhamnosus HN001 and Lactobacillus acidophilus NCFM® modifies subpopulations of fecal lactobacilli and Clostridium difficile in the elderly SJ Lahtinen, S Forssten, J Aakko, L Granlund, N Rautonen, S Salminen, ... Age 34, 133-143, 2012 | 121 | 2012 |
| Deep learning enables sleep staging from photoplethysmogram for patients with suspected sleep apnea H Korkalainen, J Aakko, B Duce, S Kainulainen, A Leino, S Nikkonen, ... Sleep 43 (11), zsaa098, 2020 | 97 | 2020 |
| Data-independent acquisition mass spectrometry in metaproteomics of gut microbiota—implementation and computational analysis J Aakko, S Pietilä, T Suomi, M Mahmoudian, R Toivonen, P Kouvonen, ... Journal of proteome research 19 (1), 432-436, 2019 | 34 | 2019 |
| Detailed assessment of sleep architecture with deep learning and shorter epoch-to-epoch duration reveals sleep fragmentation of patients with obstructive sleep apnea H Korkalainen, T Leppänen, B Duce, S Kainulainen, J Aakko, A Leino, ... IEEE journal of biomedical and health informatics 25 (7), 2567-2574, 2020 | 26 | 2020 |
| A carbohydrate-active enzyme (CAZy) profile links successful metabolic specialization of Prevotella to its abundance in gut microbiota J Aakko, S Pietilä, R Toivonen, A Rokka, K Mokkala, K Laitinen, L Elo, ... Scientific reports 10 (1), 12411, 2020 | 26 | 2020 |
| Assessment of stress tolerance acquisition in the heat‐tolerant derivative strains of Bifidobacterium animalis subsp. lactis BB‐12 and Lactobacillus rhamnosus GG J Aakko, B Sánchez, M Gueimonde, S Salminen Journal of applied microbiology 117 (1), 239-248, 2014 | 23 | 2014 |
| Lipid-based nutrient supplements do not affect gut Bifidobacterium microbiota in Malawian infants: a randomized trial J Aakko, L Grzeskowiak, T Asukas, E Päivänsäde, KM Lehto, YM Fan, ... Journal of pediatric gastroenterology and nutrition 64 (4), 610-615, 2017 | 19 | 2017 |
| Tool evaluation for the detection of variably sized indels from next generation whole genome and targeted sequencing data N Wang, V Lysenkov, K Orte, V Kairisto, J Aakko, S Khan, LL Elo PLoS Computational Biology 18 (2), e1009269, 2022 | 17 | 2022 |
| Distinctive intestinal Lactobacillus communities in 6-month-old infants from rural Malawi and Southwestern Finland J Aakko, A Endo, C Mangani, K Maleta, P Ashorn, E Isolauri, S Salminen Journal of Pediatric Gastroenterology and Nutrition 61 (6), 641-648, 2015 | 17 | 2015 |
| Evaluation of strain-specific primers for identification of Lactobacillus rhamnosus GG A Endo, J Aakko, S Salminen FEMS microbiology letters 337 (2), 120-125, 2012 | 12 | 2012 |
| Cultivation and Genomics Prove Long-Term Colonization of Donor’s Bifidobacteria in Recurrent Clostridioides difficile Patients Treated With Fecal Microbiota … H Jouhten, A Ronkainen, J Aakko, S Salminen, E Mattila, P Arkkila, ... Frontiers in Microbiology 11, 1663, 2020 | 8 | 2020 |
| A data analysis protocol for quantitative data-independent acquisition proteomics S Pietilä, T Suomi, J Aakko, LL Elo Functional Proteomics: Methods and Protocols, 455-465, 2019 | 8 | 2019 |
| The Impact of Storage Conditions on the Stability of Lactobacillus rhamnosus GG and Bifidobacterium animalis subsp. lactis Bb12 in Human Milk A Mantziari, J Aakko, H Kumar, S Tölkkö, E du Toit, S Salminen, E Isolauri, ... Breastfeeding Medicine 12 (9), 566-569, 2017 | 6 | 2017 |
| New insights into human gut microbiota development in early infancy: influence of diet, environment and mother’s microbiota J Aakko Doctoral Theses in Food Sciences at the University of Turku, 2016 | 4 | 2016 |
| Type 2 low biomarker stability and exacerbations in severe uncontrolled asthma A Viinanen, J Aakko, MI Lassenius, G Telg, K Nieminen, S Kaijala, ... Biomolecules 13 (7), 1118, 2023 | 3 | 2023 |
| Smoking is a predictor of complications in all types of surgery: a machine learning-based big data study HL Gräsbeck, ARP Reito, HJ Ekroos, JA Aakko, O Hölsä, TM Vasankari BJS open 7 (2), zrad016, 2023 | 3 | 2023 |
