Jeffrey Rosenfeld
Jeffrey Rosenfeld
Rutgers Cancer Institute of New Jersey
Verified email at
Cited by
Cited by
The variant call format and VCFtools
P Danecek, A Auton, G Abecasis, CA Albers, E Banks, MA DePristo, ...
Bioinformatics 27 (15), 2156-2158, 2011
Combinatorial patterns of histone acetylations and methylations in the human genome
Z Wang, C Zang, JA Rosenfeld, DE Schones, A Barski, S Cuddapah, ...
Nature genetics 40 (7), 897-903, 2008
A systematic survey of loss-of-function variants in human protein-coding genes
DG MacArthur, S Balasubramanian, A Frankish, N Huang, J Morris, ...
Science 335 (6070), 823-828, 2012
Integrative annotation of variants from 1092 humans: application to cancer genomics
E Khurana, Y Fu, V Colonna, XJ Mu, HM Kang, T Lappalainen, A Sboner, ...
Science 342 (6154), 1235587, 2013
Identifying recent adaptations in large-scale genomic data
SR Grossman, KG Andersen, I Shlyakhter, S Tabrizi, S Winnicki, A Yen, ...
Cell 152 (4), 703-713, 2013
Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel
O Delaneau, J Marchini, 1000 Genomes Project Consortium
Nature communications 5, 3934, 2014
Deleterious-and disease-allele prevalence in healthy individuals: insights from current predictions, mutation databases, and population-scale resequencing
Y Xue, Y Chen, Q Ayub, N Huang, EV Ball, M Mort, AD Phillips, K Shaw, ...
The American Journal of Human Genetics 91 (6), 1022-1032, 2012
Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences
GD Poznik, Y Xue, FL Mendez, TF Willems, A Massaia, MAW Sayres, ...
Nature genetics 48 (6), 593-599, 2016
Determination of enriched histone modifications in non-genic portions of the human genome
JA Rosenfeld, Z Wang, DE Schones, K Zhao, R DeSalle, MQ Zhang
BMC genomics 10 (1), 1-11, 2009
The 1000 Genomes Project: data management and community access
L Clarke, X Zheng-Bradley, R Smith, E Kulesha, C Xiao, I Toneva, ...
Nature methods 9 (5), 459-462, 2012
Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study
S Li, SW Tighe, CM Nicolet, D Grove, S Levy, W Farmerie, A Viale, ...
Nature biotechnology 32 (9), 915-925, 2014
Inflammatory monocytes orchestrate innate antifungal immunity in the lung
V Espinosa, A Jhingran, O Dutta, S Kasahara, R Donnelly, P Du, ...
PLoS pathogens 10 (2), e1003940, 2014
The impact of read length on quantification of differentially expressed genes and splice junction detection
S Chhangawala, G Rudy, CE Mason, JA Rosenfeld
Genome biology 16 (1), 1-10, 2015
Genome-wide association study implicates NDST3 in schizophrenia and bipolar disorder
T Lencz, S Guha, C Liu, J Rosenfeld, S Mukherjee, P DeRosse, M John, ...
Nature communications 4 (1), 1-10, 2013
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
Nature biotechnology 38 (11), 1347-1355, 2020
Limitations of the human reference genome for personalized genomics
JA Rosenfeld, CE Mason, TM Smith
PloS one 7 (7), e40294, 2012
Shotgun transcriptome and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
DJ Butler, C Mozsary, C Meydan, D Danko, J Foox, J Rosiene, A Shaiber, ...
BioRxiv, 2020
Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences
V Colonna, Q Ayub, Y Chen, L Pagani, P Luisi, M Pybus, E Garrison, ...
Genome biology 15 (6), 1-14, 2014
A rare deletion at distal 16p11. 2 is implicated in schizophrenia
S Guha, E Rees, A Darvasi, D Ivanov, M Ikeda, SE Bergen, ...
JAMA psychiatry (Chicago, Ill.) 70 (3), 253, 2013
Implication of a rare deletion at distal 16p11. 2 in schizophrenia
S Guha, E Rees, A Darvasi, D Ivanov, M Ikeda, SE Bergen, ...
JAMA psychiatry 70 (3), 253-260, 2013
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