Katherine St. John
Katherine St. John
Verified email at hunter.cuny.edu - Homepage
Title
Cited by
Cited by
Year
Evolutionary morphing
DF Wiley, N Amenta, DA Alcantara, D Ghosh, YJ Kil, E Delson, ...
VIS 05. IEEE Visualization, 2005., 431-438, 2005
3582005
Reconstructing reticulate evolution in species-theory and practice
L Nakhleh, T Warnow, CR Linder, K St. John
Journal of Computational Biology 12 (6), 796-811, 2005
2362005
Analysis and visualization of tree space
DM Hillis, TA Heath, K St. John
Systematic Biology 54 (3), 471-482, 2005
2172005
Performance study of phylogenetic methods:(unweighted) quartet methods and neighbor-joining
K St. John, T Warnow, BME Moret, L Vawter
Journal of Algorithms 48 (1), 173-193, 2003
832003
Designing fast converging phylogenetic methods
L Nakhleh, U Roshan, K St. John, J Sun, T Warnow
Bioinformatics 17 (suppl 1), S190-S198, 2001
712001
Absolute convergence: true trees from short sequences
T Warnow, BME Moret, K St. John
Proceedings of the twelfth annual ACM-SIAM symposium on Discrete algorithms …, 2001
682001
A reduction algorithm for computing the hybridization number of two trees
M Bordewich, S Linz, K St. John, C Semple
Evolutionary bioinformatics online 3, 86, 2007
582007
A linear-time majority tree algorithm
N Amenta, F Clarke, K St. John
Algorithms in Bioinformatics (Proceedings of WABI 2003), 216-227, 2003
582003
Approximating subtree distances between Phylogenies
ML Bonet Carbonell, K St. John, R Mahindru, N Amenta
Journal of Computational Biology 13 (8), 1419-1434, 2006
572006
The accuracy of fast phylogenetic methods for large datasets
L Nakhleh, BME Moret, U Roshan, K St. John, T Warnow
Proc. 7th Pacific Symp. Biocomputing PSB 2002, 211-222, 2002
562002
Scalable algorithms for molecular dynamics simulations on commodity clusters
JB Kevin, C Edmond, X Huafeng, OD Ron, PE Michael, AG Brent, LK John, ...
Proceedings of the ACM/IEEE Conference on Supercomputing (SC06), 11-17, 2006
452006
SequenceJuxtaposer: Fluid navigation for large-scale sequence comparison in context
J Slack, K Hildebrand, T Munzner, K St. John
German Conference on Bioinformatics 53, 2004
312004
Rotation distance is fixed-parameter tractable
S Cleary, K St. John
Information Processing Letters 109 (16), 918-922, 2009
292009
Efficiently calculating evolutionary tree measures using SAT
M Bonet, K St. John
Theory and Applications of Satisfiability Testing-SAT 2009, 4-17, 2009
292009
Untangling tanglegrams: Comparing trees by their drawings
B Venkatachalam, J Apple, K St. John, D Gusfield
Computational Biology and Bioinformatics, IEEE/ACM Transactions on 7 (4 …, 2010
272010
Review Paper: The Shape of Phylogenetic Treespace
K St. John
Systematic Biology, 2016
26*2016
Approximating geodesic tree distance
N Amenta, M Godwin, N Postarnakevich, K St. John
Information Processing Letters 103 (2), 61-65, 2007
212007
On the complexity of uSPR distance
ML Bonet, K St. John
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) 7 …, 2010
202010
The performance of phylogenetic methods on trees of bounded diameter
L Nakhleh, U Roshan, K St. John, J Sun, T Warnow
Algorithms in Bioinformatics, 214-226, 2001
192001
Counting Trees in a Phylogenetic Network Is\# P-Complete
S Linz, K St. John, C Semple
SIAM Journal on Computing 42 (4), 1768-1776, 2013
172013
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