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Ubaid Ullah Kalim
Ubaid Ullah Kalim
Senior Researcher at University of Turku
Verified email at utu.fi
Title
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Cited by
Year
Genome-wide CRISPR screens in T helper cells reveal pervasive crosstalk between activation and differentiation
J Henriksson, X Chen, T Gomes, U Ullah, KB Meyer, R Miragaia, G Duddy, ...
Cell 176 (4), 882-896. e18, 2019
1602019
Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity
B Hrdlickova, V Kumar, K Kanduri, DV Zhernakova, S Tripathi, ...
Genome medicine 6, 1-14, 2014
1192014
Comparative analysis of human and mouse transcriptomes of Th17 cell priming
S Tuomela, S Rautio, H Ahlfors, V Öling, V Salo, U Ullah, Z Chen, ...
Oncotarget 7 (12), 13416, 2016
532016
Early detection of peripheral blood cell signature in children developing β-cell autoimmunity at a young age
H Kallionpää, J Somani, S Tuomela, U Ullah, R De Albuquerque, ...
Diabetes 68 (10), 2024-2034, 2019
492019
Transcriptional repressor HIC1 contributes to suppressive function of human induced regulatory T cells
U Ullah, SBA Andrabi, SK Tripathi, O Dirasantha, K Kanduri, S Rautio, ...
Cell reports 22 (8), 2094-2106, 2018
422018
Identification of global regulators of T-helper cell lineage specification
K Kanduri, S Tripathi, A Larjo, H Mannerström, U Ullah, R Lund, ...
Genome medicine 7, 1-11, 2015
412015
A novel mechanism for ERK‐dependent regulation of IL4 transcription during human Th2‐cell differentiation
P Tripathi, N Sahoo, U Ullah, H Kallionpää, A Suneja, R Lahesmaa, ...
Immunology and cell biology 90 (7), 676-687, 2012
412012
Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3
A Schmidt, F Marabita, NA Kiani, CC Gross, HJ Johansson, S Éliás, ...
BMC biology 16, 1-35, 2018
282018
The role of Interleukin‐32 in autoimmunity
R de Albuquerque, E Komsi, I Starskaia, U Ullah, R Lahesmaa
Scandinavian Journal of Immunology 93 (2), e13012, 2021
182021
Dissecting host factors that regulate the early stages of tuberculosis infection
N Agrawal, C Bhattacharyya, A Mukherjee, U Ullah, B Pandit, KVS Rao, ...
Tuberculosis 100, 102-113, 2016
142016
PP2A and its inhibitors in helper T-cell differentiation and autoimmunity
MM Khan, UU Kalim, MH Khan, R Lahesmaa
Frontiers in Immunology 12, 786857, 2022
122022
Gene set enrichment analysis identifies LIF as a negative regulator of human Th2 cell differentiation
U Ullah, P Tripathi, R Lahesmaa, KVS Rao
Scientific reports 2 (1), 464, 2012
122012
Quantitative genome-scale metabolic modeling of human CD4+ T cell differentiation reveals subset-specific regulation of glycosphingolipid pathways
P Sen, SBA Andrabi, T Buchacher, MM Khan, UU Kalim, TM Lindeman, ...
Cell reports 37 (6), 2021
112021
Protein interactome of the cancerous inhibitor of protein phosphatase 2A (CIP2A) in Th17 cells
MM Khan, T Välikangas, MH Khan, R Moulder, U Ullah, SD Bhosale, ...
Current research in immunology 1, 10-22, 2020
112020
Early DNA methylation changes in children developing beta cell autoimmunity at a young age
I Starskaia, E Laajala, T Grönroos, T Härkönen, S Junttila, R Kattelus, ...
Diabetologia 65 (5), 844-860, 2022
102022
CIP2A constrains Th17 differentiation by modulating STAT3 signaling
MM Khan, U Ullah, MH Khan, L Kong, R Moulder, T Välikangas, ...
Iscience 23 (3), 2020
102020
Long intergenic noncoding RNA MIAT as a regulator of human Th17 cell differentiation
MM Khan, MH Khan, UU Kalim, S Khan, S Junttila, N Paulin, L Kong, ...
Frontiers in Immunology 13, 856762, 2022
62022
Gene expression signature predicts rate of type 1 diabetes progression
T Suomi, I Starskaia, UU Kalim, O Rasool, MK Jaakkola, T Grönroos, ...
EBioMedicine 92, 2023
52023
Permutation-based significance analysis reduces the type 1 error rate in bisulphite sequencing data analysis of human umbilical cord blood samples
E Laajala, V Halla-Aho, T Grönroos, UU Kalim, M Vähä-Mäkilä, M Nurmio, ...
Epigenetics 17 (12), 1608-1627, 2022
42022
Umbilical cord blood DNA methylation in children who later develop type 1 diabetes
E Laajala, UU Kalim, T Grönroos, O Rasool, V Halla-Aho, M Konki, ...
Diabetologia 65 (9), 1534-1540, 2022
32022
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