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Tanja Woyke
Tanja Woyke
DOE Joint Genome Institute
Verified email at lbl.gov
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Cited by
Year
Insights into the phylogeny and coding potential of microbial dark matter
C Rinke, P Schwientek, A Sczyrba, NN Ivanova, IJ Anderson, JF Cheng, ...
Nature 499 (7459), 431-437, 2013
23092013
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
M Hess, A Sczyrba, R Egan, TW Kim, H Chokhawala, G Schroth, S Luo, ...
Science 331 (6016), 463-467, 2011
14552011
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
14492017
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products
S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ...
Journal of Computational Biology 20 (10), 714-737, 2013
11612013
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
PM Shih, D Wu, A Latifi, SD Axen, DP Fewer, E Talla, A Calteau, F Cai, ...
Proceedings of the National Academy of Sciences 110 (3), 1053-1058, 2013
8332013
IMG/M v. 5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
IMA Chen, K Chu, K Palaniappan, M Pillay, A Ratner, J Huang, ...
Nucleic acids research 47 (D1), D666-D677, 2019
7962019
Assembling genomes and mini-metagenomes from highly chimeric reads
S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ...
Research in Computational Molecular Biology: 17th Annual International …, 2013
7912013
Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma
YJ Huang, CE Nelson, EL Brodie, TZ DeSantis, MS Baek, J Liu, T Woyke, ...
Journal of Allergy and Clinical Immunology 127 (2), 372-381. e3, 2011
7712011
Functional characteristics of an endophyte community colonizing rice roots as revealed by metagenomic analysis
A Sessitsch, P Hardoim, J Döring, A Weilharter, A Krause, T Woyke, ...
Molecular Plant-Microbe Interactions 25 (1), 28-36, 2012
7472012
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
7272017
Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species
D Coleman‐Derr, D Desgarennes, C Fonseca‐Garcia, S Gross, ...
New Phytologist 209 (2), 798-811, 2016
6422016
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
OU Mason, TC Hazen, S Borglin, PSG Chain, EA Dubinsky, JL Fortney, ...
The ISME journal 6 (9), 1715-1727, 2012
6052012
IMG 4 version of the integrated microbial genomes comparative analysis system
VM Markowitz, IMA Chen, K Palaniappan, K Chu, E Szeto, M Pillay, ...
Nucleic acids research 42 (D1), D560-D567, 2014
5902014
Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean
BK Swan, M Martinez-Garcia, CM Preston, A Sczyrba, T Woyke, D Lamy, ...
Science 333 (6047), 1296-1300, 2011
5862011
Genome-based taxonomic classification of the phylum Actinobacteria
I Nouioui, L Carro, M García-López, JP Meier-Kolthoff, T Woyke, ...
Frontiers in microbiology 9, 355158, 2018
5582018
A genomic catalog of Earth’s microbiomes
S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ...
Nature biotechnology 39 (4), 499-509, 2021
5542021
Primer and platform effects on 16S rRNA tag sequencing
J Tremblay, K Singh, ES Kirton, S He, T Woyke, SG Tringe
Frontiers in microbiology 6, 150794, 2015
5382015
Symbiosis insights through metagenomic analysis of a microbial consortium
T Woyke, H Teeling, NN Ivanova, M Huntemann, M Richter, FO Gloeckner, ...
Nature 443 (7114), 950-955, 2006
5362006
Genomic features of bacterial adaptation to plants
A Levy, I Salas Gonzalez, M Mittelviefhaus, S Clingenpeel, ...
Nature genetics 50 (1), 138-150, 2018
4852018
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
R Seshadri, SC Leahy, GT Attwood, KH Teh, SC Lambie, AL Cookson, ...
Nature biotechnology 36 (4), 359-367, 2018
4682018
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