Mitochondrial sorting and assembly machinery operates by β-barrel switching H Takeda, A Tsutsumi, T Nishizawa, C Lindau, JV Busto, LS Wenz, ... Nature 590 (7844), 163-169, 2021 | 76 | 2021 |
Interaction-component analysis of the hydration and urea effects on cytochrome c Y Yu, I Ryosuke, K Yasuhito, S Shun, M Nobuyuki J. Chem. Phys. 144, 085102, 2016 | 29 | 2016 |
MuSTAR MD: Multi-scale sampling using temperature accelerated and replica exchange molecular dynamics Y Yamamori, A Kitao The Journal of Chemical Physics 139 (14), 2013 | 28 | 2013 |
Modeling SARS‐CoV‐2 proteins in the CASP‐commons experiment A Kryshtafovych, J Moult, WM Billings, D Della Corte, K Fidelis, S Kwon, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1987-1996, 2021 | 19 | 2021 |
Free-energy analysis of the hydration and cosolvent effects on the β-sheet aggregation through all-atom molecular dynamics simulation K Masutani, Y Yamamori, K Kim, N Matubayasi The Journal of Chemical Physics 150 (14), 2019 | 16 | 2019 |
A multipoint guidance mechanism for β-barrel folding on the SAM complex H Takeda, JV Busto, C Lindau, A Tsutsumi, K Tomii, K Imai, Y Yamamori, ... Nature structural & molecular biology 30 (2), 176-187, 2023 | 15 | 2023 |
HMGB1 signaling phosphorylates Ku70 and impairs DNA damage repair in Alzheimer’s disease pathology H Tanaka, K Kondo, K Fujita, H Homma, K Tagawa, X Jin, M Jin, ... Communications Biology 4 (1), 1175, 2021 | 15 | 2021 |
Probabilistic analysis for identifying the driving force of protein folding Y Tokunaga, Y Yamamori, N Matubayasi The Journal of Chemical Physics 148 (12), 2018 | 11 | 2018 |
Protein–protein interaction prediction methods: from docking-based to AI-based approaches Y Tsuchiya, Y Yamamori, K Tomii Biophysical Reviews 14 (6), 1341-1348, 2022 | 10 | 2022 |
Interaction-component analysis of the effects of urea and its alkylated derivatives on the structure of T4-lysozyme Y Yamamori, N Matubayasi The Journal of Chemical Physics 146 (22), 2017 | 8 | 2017 |
Conformational change in the monomeric alpha-synuclein imparts fibril polymorphs C Aguirre, K Ikenaka, M So, T Maruno, K Yamaguchi, K Nakajima, ... bioRxiv, 2022.02. 10.479831, 2022 | 3 | 2022 |
Application of Homology Modeling by Enhanced Profile–Profile Alignment and Flexible-Fitting Simulation to Cryo-EM Based Structure Determination Y Yamamori, K Tomii International Journal of Molecular Sciences 23 (4), 1977, 2022 | 3 | 2022 |
Crim1C140S mutant mice reveal the importance of cysteine 140 in the internal region 1 of CRIM1 for its physiological functions T Furuichi, M Tsukamoto, M Saito, Y Sato, N Oiji, K Yagami, R Fukumura, ... Mammalian Genome 30, 329-338, 2019 | 3 | 2019 |
Author Correction: A multipoint guidance mechanism for β-barrel folding on the SAM complex H Takeda, JV Busto, C Lindau, A Tsutsumi, K Tomii, K Imai, Y Yamamori, ... Nature structural & molecular biology 30 (2), 233, 2023 | 1 | 2023 |
Crystal structure of Tam41 cytidine diphosphate diacylglycerol synthase from a Firmicutes bacterium K Kimura, F Kawai, H Kubota-Kawai, Y Watanabe, K Tomii, R Kojima, ... The Journal of Biochemistry 171 (4), 429-441, 2022 | 1 | 2022 |
An ensemble reweighting method for combining the information of experiments and simulations Y Yamamori, K Tomii Chemical Physics Letters 779, 138821, 2021 | 1 | 2021 |
PoSSuM v. 3: A Major Expansion of the PoSSuM Database for Finding Similar Binding Sites of Proteins Y Tsuchiya, T Yonezawa, Y Yamamori, H Inoura, M Osawa, K Ikeda, ... Journal of Chemical Information and Modeling 63 (23), 7578-7587, 2023 | | 2023 |
3D-models of SARS-CoV-2 proteins in the CASP Commons (COVID-19, 2020) experiment Y Yamamori, Y Tsuchiya, K Tomii (No Title), 2020 | | 2020 |
1P072 Large time step molecular dynamics using Torsion Angle Molecular Dynamics (01D. Protein: Function, Poster, The 52nd Annual Meeting of the Biophysical Society of Japan … Y Yamamori, A Kitao Seibutsu Butsuri 54 (supplement1-2), S152, 2014 | | 2014 |
Erratum:“MuSTAR MD: Multi-scale sampling using temperature accelerated and replica exchange molecular dynamics”[J. Chem. Phys. 139, 145105 (2013)] Y Yamamori, A Kitao The Journal of Chemical Physics 139 (22), 12B802_1, 2013 | | 2013 |