Jarno Mäkelä
Jarno Mäkelä
Verified email at bioch.ox.ac.uk
Title
Cited by
Cited by
Year
Mytoe: automatic analysis of mitochondrial dynamics
E Lihavainen, J Mäkelä, JN Spelbrink, AS Ribeiro
Bioinformatics 28 (7), 1050-1051, 2012
412012
Stochastic sequence-level model of coupled transcription and translation in prokaryotes
J Mäkelä, J Lloyd-Price, O Yli-Harja, AS Ribeiro
BMC bioinformatics 12 (1), 121, 2011
402011
In vivo single-molecule kinetics of activation and subsequent activity of the arabinose promoter
J Mäkelä, M Kandhavelu, SMD Oliveira, JG Chandraseelan, J Lloyd-Price, ...
Nucleic acids research 41 (13), 6544-6552, 2013
342013
Increased cytoplasm viscosity hampers aggregate polar segregation in Escherichia coli
SMD Oliveira, R Neeli‐Venkata, NSM Goncalves, JA Santinha, L Martins, ...
Molecular Microbiology 99 (4), 686-699, 2016
202016
Choosing the right label for single-molecule tracking in live bacteria: side-by-side comparison of photoactivatable fluorescent protein and Halo tag dyes
N Banaz, J Mäkelä, S Uphoff
Journal of physics D: Applied physics 52 (6), 064002, 2018
172018
Rate-limiting steps in transcription dictate sensitivity to variability in cellular components
J Mäkelä, V Kandavalli, AS Ribeiro
Scientific reports 7 (1), 1-10, 2017
142017
Self-organised segregation of bacterial chromosomal origins
A Hofmann, J Mäkelä, DJ Sherratt, D Heermann, SM Murray
Elife 8, e46564, 2019
132019
Effects of codon sequence on the dynamics of genetic networks
I Potapov, J Mäkelä, O Yli-Harja, AS Ribeiro
Journal of theoretical biology 315, 17-25, 2012
122012
Organization of the Escherichia coli chromosome by a MukBEF axial core
J Mäkelä, DJ Sherratt
Molecular cell, 2020
112020
Dynamic architecture of the Escherichia coli structural maintenance of chromosomes (SMC) complex, MukBEF
KV Rajasekar, R Baker, GLM Fisher, JR Bolla, J Mäkelä, M Tang, ...
Nucleic acids research 47 (18), 9696-9707, 2019
72019
ESTOOLS Data@ Hand: human stem cell gene expression resource
L Kong, KL Aho, K Granberg, R Lund, L Järvenpää, J Seppälä, P Gokhale, ...
nature methods 10 (9), 814-815, 2013
72013
Automatic detection of changes in the dynamics of delayed stochastic gene networks and in vivo production of RNA molecules in Escherichia coli
J Mäkelä, H Huttunen, M Kandhavelu, O Yli-Harja, AS Ribeiro
Bioinformatics 27 (19), 2714-2720, 2011
52011
Expressive statistical model checking of genetic networks with delayed stochastic dynamics
P Ballarini, J Mäkelä, AS Ribeiro
International Conference on Computational Methods in Systems Biology, 29-48, 2012
42012
Dynamics of transcription of closely spaced promoters in Escherichia coli, one event at a time
L Martins, J Mäkelä, A Häkkinen, M Kandhavelu, O Yli-Harja, JM Fonseca, ...
Journal of theoretical biology 301, 83-94, 2012
42012
SMC complexes organize the bacterial chromosome by lengthwise compaction
J Mäkelä, D Sherratt
Current Genetics, 1-5, 2020
22020
Detecting and Tracking the Tips of Fluorescently Labeled Mitochondria in U2OS Cells
E Lihavainen, J Mäkelä, JN Spelbrink, AS Ribeiro
International Conference on Image Analysis and Processing, 363-372, 2015
12015
Catching an invader
J Mäkelä, DJ Sherratt
Nature Reviews Microbiology 18 (4), 194-194, 2020
2020
Non-random segregation of sister chromosomes by Escherichia coli MukBEF axial cores
J Makela, S Uphoff, D Sherratt
bioRxiv, 2020
2020
On the Variability of the Transcription Process in Escherichia coli
J Mäkelä
Tampere University of Technology, 2016
2016
Sequence dependent properties of the expression dynamics of genes and gene networks
I Potapov, J Mäkelä, O Yli-Harja, A Ribeiro
International Conference on Computational Methods in Systems Biology, 307-321, 2012
2012
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Articles 1–20