Abdallah Sayyed-Ahmad
Abdallah Sayyed-Ahmad
Professor of Physics, Birzeit University
Vahvistettu sähköpostiosoite verkkotunnuksessa - Kotisivu
Computational and biochemical characterization of two partially overlapping interfaces and multiple weak-affinity K-Ras dimers
P Prakash, A Sayyed-Ahmad, KJ Cho, DM Dolino, W Chen, H Li, BJ Grant, ...
Scientific reports 7 (1), 1-11, 2017
Spatiotemporal analysis of K-Ras plasma membrane interactions reveals multiple high order homo-oligomeric complexes
S Sarkar-Banerjee, A Sayyed-Ahmad, P Prakash, KJ Cho, MN Waxham, ...
Journal of the American Chemical Society 139 (38), 13466-13475, 2017
Amyloid-β peptide dimers undergo a random coil to β-sheet transition in the aqueous phase but not at the neuronal membrane
H Fatafta, M Khaled, MC Owen, A Sayyed-Ahmad, B Strodel
Proceedings of the National Academy of Sciences 118 (39), e2106210118, 2021
On the nature of antimicrobial activity: a model for protegrin-1 pores
AA Langham, AS Ahmad, YN Kaznessis
Journal of the American Chemical Society 130 (13), 4338-4346, 2008
Poisson-Nernst-Planck models of nonequilibrium ion electrodiffusion through a protegrin transmembrane pore
DS Bolintineanu, A Sayyed-Ahmad, HT Davis, YN Kaznessis
PLoS computational biology 5 (1), e1000277, 2009
The role of conserved waters in conformational transitions of Q61H K-ras
P Prakash, A Sayyed-Ahmad, AA Gorfe
PLoS computational biology 8 (2), e1002394, 2012
Distinct dynamics and interaction patterns in H‐and K‐Ras oncogenic P‐loop mutants
A Sayyed‐Ahmad, P Prakash, AA Gorfe
Proteins: Structure, Function, and Bioinformatics 85 (9), 1618–1632, 2017
Computational equilibrium thermodynamic and kinetic analysis of K-Ras dimerization through an effector binding surface suggests limited functional role
A Sayyed-Ahmad, KJ Cho, JF Hancock, AA Gorfe
The Journal of Physical Chemistry B 120 (33), 8547-8556, 2016
Efficient solution technique for solving the Poisson–Boltzmann equation
A Sayyed–Ahmad, K Tuncay, PJ Ortoleva
Journal of computational chemistry 25 (8), 1068-1074, 2004
Conformational and dynamical effects of Tyr32 phosphorylation in K-Ras: molecular dynamics simulation and Markov state models analysis
M Khaled, A Gorfe, A Sayyed-Ahmad
The Journal of Physical Chemistry B 123 (36), 7667-7675, 2019
Structure and dynamics of cholic acid and dodecylphosphocholine− cholic acid aggregates
A Sayyed-Ahmad, LM Lichtenberger, AA Gorfe
Langmuir 26 (16), 13407-13414, 2010
pMD-membrane: a method for ligand binding site identification in membrane-bound proteins
P Prakash, A Sayyed-Ahmad, AA Gorfe
PLoS computational biology 11 (10), e1004469, 2015
Aggregation behavior of ibuprofen, cholic acid and dodecylphosphocholine micelles
P Prakash, A Sayyed-Ahmad, Y Zhou, DE Volk, DG Gorenstein, E Dial, ...
Biochimica et Biophysica Acta (BBA)-Biomembranes 1818 (12), 3040-3047, 2012
Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory
A Sayyed-Ahmad, K Tuncay, PJ Ortoleva
BMC bioinformatics 8, 1-18, 2007
Mixed-probe simulation and probe-derived surface topography map analysis for ligand binding site identification
A Sayyed-Ahmad, AA Gorfe
Journal of chemical theory and computation 13 (4), 1851-1861, 2017
The Karyote® Physico-Chemical Genomic, Proteomic, Metabolic Cell Modeling System
P Ortoleva, E Berry, Y Brun, J Fan, M Fontus, K Hubbard, K Jaqaman, ...
OMICS A Journal of Integrative Biology 7 (3), 269-283, 2003
Determining the orientation of protegrin-1 in DLPC bilayers using an implicit solvent-membrane model
A Sayyed-Ahmad, YN Kaznessis
PLoS One 4 (3), e4799, 2009
Relative free energy of binding between antimicrobial peptides and SDS or DPC micelles
A Sayyed-Ahmad, H Khandelia, YN Kaznessis
Molecular simulation 35 (10-11), 986-997, 2009
Toward automated cell model development through information theory
A Sayyed-Ahmad, K Tuncay, PJ Ortoleva
The Journal of Physical Chemistry A 107 (49), 10554-10565, 2003
Molecular simulations of IDPs: From ensemble generation to IDP interactions leading to disorder-to-order transitions
H Fatafta, S Samantray, A Sayyed-Ahmad, O Coskuner-Weber, B Strodel
Progress in molecular biology and translational science 183, 135-185, 2021
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Artikkelit 1–20