Jon Sorenson

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Dale R WebsterResearch Director, GoogleVerified email at google.com
Stephen TurnerPacific BiosciencesVerified email at pacificbiosciences.com
Eric SchadtProfessor of Genetics and Genomic Sciences, Mount Sinai School of MedicineVerified email at mssm.edu
Patrick Marks10x GenomicsVerified email at 10xgenomics.com
Michael LindermanAssistant Professor of Computer Science, Middlebury CollegeVerified email at middlebury.edu
Alexander PertsemlidisProfessor, UT Health Science Center at San AntonioVerified email at uthscsa.edu
Andrew KasarskisChief Data Officer, Sema4Verified email at sema4.com
Jason ChinGeneDXVerified email at genedx.com
john mekalanosprofessorVerified email at hms.harvard.edu
Matthew WaldorProfessor of Medicine, Harvard UniversityVerified email at research.bwh.harvard.edu
A K SoperSTFCVerified email at stfc.ac.uk
Andrey KislyukDNAnexus; Georgia Tech; UC BerkeleyVerified email at ocf.berkeley.edu
Mark ChaissonUniversity of Southern CaliforniaVerified email at usc.edu
Robert P. SebraProfessor, Genetics & Genomic Sciences, Icahn School of Medicine at Mount SinaiVerified email at mssm.edu
David C. ClaryProfessor of Chemistry, University of OxfordVerified email at chem.ox.ac.uk
Ali BashirGoogle Accelerated Sciences, Google Research & Dept. of Genetics and Genomics Sciences, Icahn SchoolVerified email at google.com
Fred ChristiansKariusVerified email at alumni.stanford.edu
Joel A MalekAssociate Professor in Genetic Medicine, Director of Genomics Lab, Weill Cornell Medicine-QatarVerified email at qatar-med.cornell.edu
Manolis KellisProfessor of Computer Science, MIT and Broad InstituteVerified email at mit.edu
Jeffrey AndrewsTruchard Family Chair and Director of 6G@UT, University of Texas at AustinVerified email at ece.utexas.edu

Jon Sorenson

VP, Technology Development at Atomwise

Verified email at atomwise.com

computational biology cheminformatics statistics next-generation sequencing clinical genetics


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Real-time DNA sequencing from single polymerase molecules J Eid, A Fehr, J Gray, K Luong, J Lyle, G Otto, P Peluso, D Rank, ... Science 323 (5910), 133-138, 2009	4387	2009
The origin of the Haitian cholera outbreak strain CS Chin, J Sorenson, JB Harris, WP Robins, RC Charles, ... New England Journal of Medicine 364 (1), 33-42, 2011	893	2011
Computational solutions to large-scale data management and analysis EE Schadt, MD Linderman, J Sorenson, L Lee, GP Nolan Nature reviews genetics 11 (9), 647-657, 2010	760	2010
What can x-ray scattering tell us about the radial distribution functions of water? JM Sorenson, G Hura, RM Glaeser, T Head-Gordon The Journal of chemical physics 113 (20), 9149-9161, 2000	496	2000
A high-quality x-ray scattering experiment on liquid water at ambient conditions G Hura, JM Sorenson, RM Glaeser, T Head-Gordon The Journal of Chemical Physics 113 (20), 9140-9148, 2000	385	2000
Rapid whole-genome mutational profiling using next-generation sequencing technologies DR Smith, AR Quinlan, HE Peckham, K Makowsky, W Tao, B Woolf, ... Genome research 18 (10), 1638-1642, 2008	353	2008
Nanopore sequencing devices and methods S Turner, B Flusberg, M Foquet, H Callebaut, R Sebra, B Chaudhuri, ... US Patent 8,986,928, 2015	257	2015
A hybrid approach for the automated finishing of bacterial genomes A Bashir, AA Klammer, WP Robins, CS Chin, D Webster, E Paxinos, ... Nature biotechnology 30 (7), 701-707, 2012	222	2012
Sequence assembly and consensus sequence determination A Klammer, S Tang, M Chaisson, J Sorenson, C Chen-Shan US Patent App. 13/034,233, 2011	159	2011
Apparatus, system, and method using immiscible-fluid-discrete-volumes L Lee, S Woo, C Ma, R Reel, M Oldham, D Cox, B Schroeder, J Sorenson, ... US Patent App. 11/507,735, 2007	126	2007
Determining the role of hydration forces in protein folding JM Sorenson, G Hura, AK Soper, A Pertsemlidis, T Head-Gordon The Journal of Physical Chemistry B 103 (26), 5413-5426, 1999	120	1999
An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge CA Brownstein, AH Beggs, N Homer, B Merriman, TW Yu, KC Flannery, ... Genome biology 15, 1-18, 2014	113	2014
Methods for identifying nucleic acid modifications B Flusberg, J Korlach, J Wegener, TA Clark, I Vilfan, A Kislyuk, S Turner, ... US Patent 9,175,338, 2015	104	2015
Cloud and heterogeneous computing solutions exist today for the emerging big data problems in biology EE Schadt, MD Linderman, J Sorenson, L Lee, GP Nolan Nature Reviews Genetics 12 (3), 224-224, 2011	94	2011
Methods for identifying nucleic acid modifications B Flusberg, S Turner, J Lee, L Jia, J Korlach, J Sorenson, D Webster, ... US Patent 9,175,341, 2015	83	2015
Algorithms for sequence determination J Sorenson, S Tang, P Marks, C Chen-Shan US Patent 8,370,079, 2013	83	2013
System and method for consensus-calling with per-base quality values for sample assemblies JM Sorenson US Patent 7,406,385, 2008	78	2008
Matching simulation and experiment: a new simplified model for simulating protein folding JM Sorenson, T Head-Gordon Journal of computational biology 7 (3-4), 469-481, 2000	75	2000
Intermittent detection during analytical reactions KM Maxham, J Sorenson, J Eid, P Marks, K Travers US Patent 8,143,030, 2012	69	2012
Intermittent detection during analytical reactions S Turner, J Sorenson, KM Maxham, J Eid US Patent 9,057,102, 2015	66	2015

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