William A Baumgartner Jr
William A Baumgartner Jr
Research Associate, University of Colorado Denver
Verified email at ucdenver.edu
Cited by
Cited by
Overview of BioCreative II gene mention recognition
L Smith, LK Tanabe, RJ nee Ando, CJ Kuo, IF Chung, CN Hsu, YS Lin, ...
Genome biology 9 (S2), S2, 2008
Manual curation is not sufficient for annotation of genomic databases
WA Baumgartner Jr, KB Cohen, LM Fox, G Acquaah-Mensah, L Hunter
Bioinformatics 23 (13), i41-i48, 2007
Concept annotation in the CRAFT corpus
M Bada, M Eckert, D Evans, K Garcia, K Shipley, D Sitnikov, ...
BMC bioinformatics 13 (1), 161, 2012
OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type …
L Hunter, Z Lu, J Firby, WA Baumgartner, HL Johnson, PV Ogren, ...
BMC bioinformatics 9 (1), 78, 2008
MutationFinder: a high-performance system for extracting point mutation mentions from text
JG Caporaso, WA Baumgartner Jr, DA Randolph, KB Cohen, L Hunter
Bioinformatics 23 (14), 1862-1865, 2007
BioLemmatizer: a lemmatization tool for morphological processing of biomedical text
H Liu, T Christiansen, WAB Jr, K Verspoor
Journal of Biomedical Semantics 3 (1), 3, 2012
U-Compare: share and compare text mining tools with UIMA
Y Kano, WA Baumgartner Jr, L McCrohon, S Ananiadou, KB Cohen, ...
Bioinformatics 25 (15), 1997-1998, 2009
A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools
K Verspoor, KB Cohen, A Lanfranchi, C Warner, HL Johnson, C Roeder, ...
BMC bioinformatics 13 (1), 207, 2012
Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters
C Funk, W Baumgartner, B Garcia, C Roeder, M Bada, KB Cohen, ...
BMC bioinformatics 15 (1), 59, 2014
Introducing meta-services for biomedical information extraction
F Leitner, M Krallinger, C Rodriguez-Penagos, J Hakenberg, C Plake, ...
Genome biology 9 (S2), S6, 2008
Pulmonary capillaries are recruited during pulsatile flow
RG Presson Jr, WA Baumgartner Jr, AJ Peterson, RW Glenny, ...
Journal of Applied Physiology, 2002
Biomedical discovery acceleration, with applications to craniofacial development
SM Leach, H Tipney, W Feng, WA Baumgartner, P Kasliwal, RP Schuyler, ...
PLoS computational biology 5 (3), e1000215, 2009
High-precision biological event extraction with a concept recognizer
KB Cohen, K Verspoor, HL Johnson, C Roeder, P Ogren, ...
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, 50-58, 2009
An open-source framework for large-scale, flexible evaluation of biomedical text mining systems
WA Baumgartner, KB Cohen, L Hunter
Journal of Biomedical Discovery and Collaboration 3 (1), 1, 2008
KaBOB: ontology-based semantic integration of biomedical databases
KM Livingston, M Bada, WA Baumgartner, LE Hunter
BMC bioinformatics 16 (1), 1-21, 2015
Concept recognition for extracting protein interaction relations from biomedical text
WA Baumgartner, Z Lu, HL Johnson, JG Caporaso, J Paquette, ...
Genome biology 9 (S2), S9, 2008
Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies
HL Johnson, KB Cohen, WA Baumgartner Jr, Z Lu, M Bada, T Kester, ...
Biocomputing 2006, 28-39, 2006
Improving protein function prediction methods with integrated literature data
A Gabow, S Leach, W Baumgartner, L Hunter, D Goldberg
BMC bioinformatics 9 (1), 198, 2008
Annotation of all coreference in biomedical text: Guideline selection and adaptation
KB Cohen, A Lanfranchi, W Corvey, WA Baumgartner Jr, C Roeder, ...
Proceedings of BioTxtM 2010: 2nd workshop on building and evaluating …, 2010
Selected contribution: measuring the response time of pulmonary capillary recruitment to sudden flow changes
EM Jaryszak, WA Baumgartner Jr, AJ Peterson, RG Presson Jr, ...
Journal of Applied Physiology 89 (3), 1233-1238, 2000
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