Tapio Salakoski
Tapio Salakoski
Professor of Computer Science, University of Turku
Vahvistettu sähköpostiosoite verkkotunnuksessa utu.fi
NimikeViittauksetVuosi
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221, 2013
6052013
BioInfer: a corpus for information extraction in the biomedical domain
S Pyysalo, F Ginter, J Heimonen, J Björne, J Boberg, J Järvinen, ...
BMC bioinformatics 8 (1), 50, 2007
4192007
All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning
A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter, T Salakoski
BMC bioinformatics 9 (11), S2, 2008
2852008
Comparative analysis of five protein-protein interaction corpora
S Pyysalo, A Airola, J Heimonen, J Björne, F Ginter, T Salakoski
BMC bioinformatics 9 (3), S6, 2008
2282008
Extracting complex biological events with rich graph-based feature sets
J Björne, J Heimonen, F Ginter, A Airola, T Pahikkala, T Salakoski
Proceedings of the Workshop on Current Trends in Biomedical Natural Language …, 2009
2242009
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 184, 2016
1822016
Lactobacillus-dominated cervicovaginal microbiota associated with reduced HIV/STI prevalence and genital HIV viral load in African women
H Borgdorff, E Tsivtsivadze, R Verhelst, M Marzorati, S Jurriaans, ...
The ISME journal 8 (9), 1781, 2014
1312014
Complex event extraction at PubMed scale
J Björne, F Ginter, S Pyysalo, J Tsujii, T Salakoski
Bioinformatics 26 (12), i382-i390, 2010
1202010
Generalizing biomedical event extraction
J Björne, T Salakoski
Proceedings of the BioNLP Shared Task 2011 Workshop, 183-191, 2011
1142011
VILLE: a language-independent program visualization tool
T Rajala, MJ Laakso, E Kaila, T Salakoski
Proceedings of the Seventh Baltic Sea Conference on Computing Education …, 2007
1042007
Why complicate things?: introducing programming in high school using Python
L Grandell, M Peltomäki, RJ Back, T Salakoski
Proceedings of the 8th Australasian Conference on Computing Education-Volume …, 2006
1032006
Effectiveness of Program Visualization: A Case Study with the ViLLE Tool.
T Rajala, MJ Laakso, E Kaila, T Salakoski
Journal of Information Technology Education 7, 2008
1022008
A graph kernel for protein-protein interaction extraction
A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter, T Salakoski
Proceedings of the workshop on current trends in biomedical natural language …, 2008
1012008
Large-scale event extraction from literature with multi-level gene normalization
S Van Landeghem, J Björne, CH Wei, K Hakala, S Pyysalo, S Ananiadou, ...
PloS one 8 (4), e55814, 2013
962013
TEES 2.1: Automated annotation scheme learning in the BioNLP 2013 Shared Task
J Björne, T Salakoski
Proceedings of the BioNLP shared task 2013 workshop, 16-25, 2013
952013
An experimental comparison of cross-validation techniques for estimating the area under the ROC curve
A Airola, T Pahikkala, W Waegeman, B De Baets, T Salakoski
Computational Statistics & Data Analysis 55 (4), 1828-1844, 2011
912011
Learning to rank with pairwise regularized least-squares
T Pahikkala, E Tsivtsivadze, A Airola, J Boberg, T Salakoski
SIGIR 2007 workshop on learning to rank for information retrieval 80, 27-33, 2007
872007
What about a simple language? Analyzing the difficulties in learning to program
L Mannila, M Peltomäki, T Salakoski
Computer Science Education 16 (3), 211-227, 2006
792006
Regularized machine learning in the genetic prediction of complex traits
S Okser, T Pahikkala, A Airola, T Salakoski, S Ripatti, T Aittokallio
PLoS genetics 10 (11), e1004754, 2014
742014
UTurku: drug named entity recognition and drug-drug interaction extraction using SVM classification and domain knowledge
J Björne, S Kaewphan, T Salakoski
Second Joint Conference on Lexical and Computational Semantics (* SEM …, 2013
662013
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Artikkelit 1–20