Alan Ruttenberg

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Barry SmithProfessor of Philosophy, Biomedical Informatics, and Computer Science, University at BuffaloVerified email at buffalo.edu
Christopher J MungallLawrence Berkeley National LaboratoryVerified email at lbl.gov
Mélanie CourtotOntario Institute for Cancer Research (OICR)Verified email at oicr.on.ca
Ryan BrinkmanBritish Columbia Cancer AgencyVerified email at bccrc.ca
Karen EilbeckProfessor, Biomedical Informatics, University of UtahVerified email at genetics.utah.edu
Yongqun HeAssociate Professor, University of Michigan Medical SchoolVerified email at med.umich.edu
Philippe Rocca-SerraUniversity of OxfordVerified email at oerc.ox.ac.uk
Darren A. NataleProtein Information Resource, Georgetown University Medical CenterVerified email at georgetown.edu
Alexander D. DiehlAssociate Professor of Biomedical Informatics, University at BuffaloVerified email at buffalo.edu
Susanna-Assunta SansoneUniversity of Oxford, Professor of Data Readiness; Oxford e-Research Centre, Associate Director.Verified email at oerc.ox.ac.uk
Werner CeustersUniversity at BuffaloVerified email at buffalo.edu
Richard H. ScheuermannJ. Craig Venter InstituteVerified email at jcvi.org
Judith BlakeProfessor of Mammalian GeneticsVerified email at jax.org
Bijan ParsiaProfessor of Computer Science, University of ManchesterVerified email at manchester.ac.uk
Jie ZhengUniversity of PennsylvaniaVerified email at upenn.edu
Peter F. Patel-SchneiderPARCVerified email at parc.com
James MaloneCTO, SciBiteVerified email at scibite.com
Ian HorrocksProfessor of Computer Science, University of OxfordVerified email at cs.ox.ac.uk
Jonathan A ReesRonin InstituteVerified email at mumble.net
Suzanna LewisLawrence Berkeley National LaboratoryVerified email at lbl.gov

Alan Ruttenberg

Senior Research Associate, Department of Philosophy, University at Buffalo

No verified email - Homepage

applied ontology biomedical knowledge sharing open access computational biology


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The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration B Smith, M Ashburner, C Rosse, J Bard, W Bug, W Ceusters, LJ Goldberg, ... Nature biotechnology 25 (11), 1251-1255, 2007	2868	2007
OWL 2 web ontology language: Structural specification and functional-style syntax B Motik, PF Patel-Schneider, B Parsia, C Bock, A Fokoue, P Haase, ... W3C Recommendation 27, 2009	1121	2009
Advancing translational research with the Semantic Web A Ruttenberg, T Clark, W Bug, M Samwald, O Bodenreider, H Chen, ... BMC bioinformatics 8, 1-16, 2007	345	2007
Modeling biomedical experimental processes with OBI RR Brinkman, M Courtot, D Derom, JM Fostel, Y He, P Lord, J Malone, ... Journal of biomedical semantics 1 (1), 1-11, 2010	318	2010
The ontology for biomedical investigations A Bandrowski, R Brinkman, M Brochhausen, MH Brush, B Bug, ... PloS one 11 (4), e0154556, 2016	303	2016
OntoFox: web-based support for ontology reuse Z Xiang, M Courtot, RR Brinkman, A Ruttenberg, Y He BMC research notes 3, 1-12, 2010	226	2010
Finding our way through phenotypes AR Deans, SE Lewis, E Huala, SS Anzaldo, M Ashburner, JP Balhoff, ... PLoS biology 13 (1), e1002033, 2015	207	2015
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability AD Diehl, TF Meehan, YM Bradford, MH Brush, WM Dahdul, DS Dougall, ... Journal of biomedical semantics 7, 1-10, 2016	194	2016
The SWAN biomedical discourse ontology P Ciccarese, E Wu, G Wong, M Ocana, J Kinoshita, A Ruttenberg, T Clark Journal of biomedical informatics 41 (5), 739-751, 2008	171	2008
Ontobee: A Linked Data Server and Browser for Ontology Terms Z Xiang, C Mungall, A Ruttenberg, Y He International Conference on Biomedical Ontology, 2011	153	2011
MIREOT: the minimum information to reference an external ontology term M Courtot, F Gibson, AL Lister, J Malone, D Schober, RR Brinkman, ... Applied Ontology 6 (1), 23-33, 2011	152	2011
Life sciences on the Semantic Web: the Neurocommons and beyond A Ruttenberg, JA Rees, M Samwald, MS Marshall Briefings in bioinformatics 10 (2), 193-204, 2009	141	2009
Ontobee: a linked ontology data server to support ontology term dereferencing, linkage, query and integration E Ong, Z Xiang, B Zhao, Y Liu, Y Lin, J Zheng, C Mungall, M Courtot, ... Nucleic acids research 45 (D1), D347-D352, 2017	132	2017
Protein Ontology: a controlled structured network of protein entities DA Natale, CN Arighi, JA Blake, CJ Bult, KR Christie, J Cowart, ... Nucleic acids research 42 (D1), D415-D421, 2014	86	2014
VO: vaccine ontology Y He, L Cowell, AD Diehl, HL Mobley, B Peters, A Ruttenberg, ... The 1st International Conference on Biomedical Ontology (ICBO-2009): July, 24-26, 2009	86	2009
MIREOT: the minimum information to reference an external ontology term M Courtot, F Gibson, AL Lister, J Malone, D Schober, RR Brinkman, ... Aug-2009, 2009	76	2009
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities DA Natale, CN Arighi, JA Blake, J Bona, C Chen, SC Chen, KR Christie, ... Nucleic acids research 45 (D1), D339-D346, 2017	73	2017
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies R Jackson, N Matentzoglu, JA Overton, R Vita, JP Balhoff, PL Buttigieg, ... Database 2021, 2021	72	2021
Computational knowledge integration in biopharmaceutical research D Ficenec, M Osborne, J Pradines, D Richards, R Felciano, RJ Cho, ... Briefings in bioinformatics 4 (3), 260-278, 2003	56	2003
OWL 2 Web Ontology Language structural specification and functional-style syntax, 2009 B Motik, PF Patel-Schneider, B Parsia, C Bock, A Fokoue, P Haase, ... URL: http://www. w3. org/TR/2009/REC-owl2-syntax-20091027, 2009	53	2009

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