Anna Kreshuk
Anna Kreshuk
Group Leader, EMBL Heidelberg
Verified email at embl.de
Title
Cited by
Cited by
Year
ROOT—A C++ framework for petabyte data storage, statistical analysis and visualization
I Antcheva, M Ballintijn, B Bellenot, M Biskup, R Brun, N Buncic, P Canal, ...
Computer Physics Communications 180 (12), 2499-2512, 2009
7692009
Ilastik: interactive machine learning for (bio) image analysis
S Berg, D Kutra, T Kroeger, CN Straehle, BX Kausler, C Haubold, ...
Nature Methods 16 (12), 1226-1232, 2019
3172019
Automated detection and segmentation of synaptic contacts in nearly isotropic serial electron microscopy images
A Kreshuk, CN Straehle, C Sommer, U Koethe, M Cantoni, G Knott, ...
PloS one 6 (10), e24899, 2011
1422011
ROOT—A C++ framework for petabyte data storage, statistical analysis and visualization
I Antcheva, M Ballintijn, B Bellenot, M Biskup, R Brun, N Buncic, P Canal, ...
Computer Physics Communications 182 (6), 1384-1385, 2011
1302011
Multicut brings automated neurite segmentation closer to human performance
T Beier, C Pape, N Rahaman, T Prange, S Berg, DD Bock, A Cardona, ...
Nature Methods 14 (2), 2017
992017
Three‐dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues
C Calě, J Baghabra, DJ Boges, GR Holst, A Kreshuk, FA Hamprecht, ...
Journal of Comparative Neurology 524 (1), 23-38, 2016
852016
Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons
B Maco, A Holtmaat, M Cantoni, A Kreshuk, CN Straehle, FA Hamprecht, ...
PloS one 8 (2), e57405, 2013
762013
Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks
A Kreshuk, U Koethe, E Pax, DD Bock, FA Hamprecht
PLoS ONE, e87351, 2014
582014
Accurate and versatile 3D segmentation of plant tissues at cellular resolution
A Wolny, L Cerrone, A Vijayan, R Tofanelli, AV Barro, M Louveaux, ...
Elife 9, e57613, 2020
462020
Semiautomated correlative 3D electron microscopy of in vivo–imaged axons and dendrites
B Maco, M Cantoni, A Holtmaat, A Kreshuk, FA Hamprecht, GW Knott
Nature protocols 9 (6), 1354-1366, 2014
412014
Segmenting and Tracking Multiple Dividing Targets Using ilastik
C Haubold, M Schiegg, A Kreshuk, S Berg, U Koethe, FA Hamprecht
Focus on Bio-Image Informatics, 199-229, 2016
402016
Automated segmentation of synapses in 3D EM data
A Kreshuk, CN Straehle, C Sommer, U Koethe, G Knott, FA Hamprecht
Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on …, 2011
342011
The Mutex Watershed: Efficient, Parameter-Free Image Partitioning
S Wolf, C Pape, A Bailoni, N Rahaman, A Kreshuk, U Köthe, ...
Proceedings of the European Conference on Computer Vision (ECCV), 546-562, 2018
332018
Profiling cellular diversity in sponges informs animal cell type and nervous system evolution
JM Musser, KJ Schippers, M Nickel, G Mizzon, AB Kohn, C Pape, ...
bioRxiv, 758276, 2019
282019
Automated detection and analysis of bimodal isotope peak distributions in H/D exchange mass spectrometry using HEXICON
A Kreshuk, M Stankiewicz, X Lou, M Kirchner, FA Hamprecht, MP Mayer
International Journal of Mass Spectrometry 302 (1), 125-131, 2011
252011
Neuron segmentation with high-level biological priors
NE Krasowski, T Beier, GW Knott, U Köthe, FA Hamprecht, A Kreshuk
IEEE transactions on medical imaging 37 (4), 829-839, 2018
222018
Who Is Talking to Whom: Synaptic Partner Detection in Anisotropic Volumes of Insect Brain
A Kreshuk, J Funke, A Cardona, FA Hamprecht
Medical Image Computing and Computer-Assisted Intervention–MICCAI 2015, 661-668, 2015
192015
Solving Large Multicut Problems for Connectomics via Domain Decomposition
C Pape, T Beier, P Li, V Jain, DD Bock, A Kreshuk
Proceedings of the IEEE Conference on Computer Vision and Pattern …, 2017
182017
Automated tracing of myelinated axons and detection of the nodes of Ranvier in serial images of peripheral nerves
A Kreshuk, R Walecki, U Koethe, M Gierthmuehlen, D Plachta, C Genoud, ...
Journal of Microscopy, 2015
182015
Whole-body integration of gene expression and single-cell morphology
HM Vergara, C Pape, KI Meechan, V Zinchenko, C Genoud, AA Wanner, ...
Cell 184 (18), 4819-4837. e22, 2021
172021
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