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Irene Papatheodorou
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The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups
C Curtis, SP Shah, SF Chin, G Turashvili, OM Rueda, MJ Dunning, ...
Nature 486 (7403), 346-352, 2012
48392012
Pan-cancer analysis of whole genomes
I The, TPCA of Whole, Genomes Consortium
Nature 578 (7793), 82, 2020
8302020
ArrayExpress update–from bulk to single-cell expression data
A Athar, A Füllgrabe, N George, H Iqbal, L Huerta, A Ali, C Snow, ...
Nucleic acids research 47 (D1), D711-D715, 2019
3222019
Open Targets: a platform for therapeutic target identification and validation
G Koscielny, P An, D Carvalho-Silva, JA Cham, L Fumis, R Gasparyan, ...
Nucleic acids research 45 (D1), D985-D994, 2017
3052017
Ensembl Genomes 2020—enabling non-vertebrate genomic research
KL Howe, B Contreras-Moreira, N De Silva, G Maslen, W Akanni, J Allen, ...
Nucleic acids research 48 (D1), D689-D695, 2020
2912020
Expression Atlas: gene and protein expression across multiple studies and organisms
I Papatheodorou, NA Fonseca, M Keays, YA Tang, E Barrera, W Bazant, ...
Nucleic acids research 46 (D1), D246-D251, 2018
2862018
Expression Atlas update: from tissues to single cells
I Papatheodorou, P Moreno, J Manning, AMP Fuentes, N George, ...
Nucleic acids research 48 (D1), D77-D83, 2020
2492020
Gramene 2018: unifying comparative genomics and pathway resources for plant research
MK Tello-Ruiz, S Naithani, JC Stein, P Gupta, M Campbell, A Olson, ...
Nucleic acids research 46 (D1), D1181-D1189, 2018
1232018
Genome‐wide dFOXO targets and topology of the transcriptomic response to stress and insulin signalling
N Alic, TD Andrews, ME Giannakou, I Papatheodorou, C Slack, ...
Molecular systems biology 7 (1), 502, 2011
1182011
DAF-16/FoxO Directly Regulates an Atypical AMP-Activated Protein Kinase Gamma Isoform to Mediate the Effects of Insulin/IGF-1 Signaling on Aging in Caenorhabditis elegans
JMA Tullet, C Araiz, MJ Sanders, C Au, A Benedetto, I Papatheodorou, ...
PLOS Genetics, 2014
682014
Interplay of dFOXO and Two ETS-Family Transcription Factors Determines Lifespan in Drosophila melanogaster
LP Nazif Alic, Maria E. Giannakou, Irene Papatheodorou, Matthew P. Hoddinott ...
PLOS Genetics, 2014
552014
A tumor DNA complex aberration index is an independent predictor of survival in breast and ovarian cancer
HKM Vollan, OM Rueda, SF Chin, C Curtis, G Turashvili, S Shah, ...
Molecular oncology 9 (1), 115-127, 2015
492015
Putative cell type discovery from single-cell gene expression data
Z Miao, P Moreno, N Huang, I Papatheodorou, A Brazma, SA Teichmann
Nature methods 17 (6), 621-628, 2020
452020
Computational biology for ageing
D Wieser, I Papatheodorou, M Ziehm, JM Thornton
Philosophical Transactions of the Royal Society B: Biological Sciences 366 …, 2011
412011
Inference of gene relations from microarray data by abduction
I Papatheodorou, A Kakas, M Sergot
International Conference on Logic Programming and Nonmonotonic Reasoning …, 2005
372005
Gramene 2021: harnessing the power of comparative genomics and pathways for plant research
MK Tello-Ruiz, S Naithani, P Gupta, A Olson, S Wei, J Preece, Y Jiao, ...
Nucleic Acids Research 49 (D1), D1452-D1463, 2021
362021
eQTL Catalogue: a compendium of uniformly processed human gene expression and splicing QTLs
N Kerimov, JD Hayhurst, K Peikova, JR Manning, P Walter, L Kolberg, ...
BioRxiv, 2020.01. 29.924266, 2021
342021
Plant Reactome: a knowledgebase and resource for comparative pathway analysis
S Naithani, P Gupta, J Preece, P D’Eustachio, JL Elser, P Garg, ...
Nucleic acids research 48 (D1), D1093-D1103, 2020
332020
A metadata approach for clinical data management in translational genomics studies in breast cancer
I Papatheodorou, C Crichton, L Morris, P Maccallum, J Davies, ...
BMC medical genomics 2 (1), 1-10, 2009
322009
A compendium of uniformly processed human gene expression and splicing quantitative trait loci
N Kerimov, JD Hayhurst, K Peikova, JR Manning, P Walter, L Kolberg, ...
Nature genetics 53 (9), 1290-1299, 2021
302021
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