Flexible experimentation in the modeling and simulation framework JAMES II—implications for computational systems biology R Ewald, J Himmelspach, M Jeschke, S Leye, AM Uhrmacher Briefings in bioinformatics 11 (3), 290-300, 2010 | 60 | 2010 |
A discussion on experimental model validation S Leye, J Himmelspach, AM Uhrmacher 2009 11th International Conference on Computer Modelling and Simulation, 161-167, 2009 | 44 | 2009 |
Parallel and distributed simulation of parallel DEVS models J Himmelspach, R Ewald, S Leye, AM Uhrmacher Proceedings of the 2007 spring simulation multiconference-Volume 2, 249-256, 2007 | 35 | 2007 |
Elucidating the Sources of β-Catenin Dynamics in Human Neural Progenitor Cells O Mazemondet, M John, S Leye, A Rolfs, AM Uhrmacher Public Library of Science 7 (8), e42792, 2012 | 31 | 2012 |
A grid-inspired mechanism for coarse-grained experiment execution S Leye, J Himmelspach, M Jeschke, R Ewald, AM Uhrmacher 2008 12th IEEE/ACM International Symposium on Distributed Simulation and …, 2008 | 30 | 2008 |
Template and frame based experiment workflows in modeling and simulation software with WORMS S Rybacki, S Leye, J Himmelspach, AM Uhrmacher 2012 IEEE Eighth World Congress on Services, 25-32, 2012 | 17 | 2012 |
An efficient and adaptive mechanism for parallel simulation replication R Ewald, S Leye, AM Uhrmacher 2009 ACM/IEEE/SCS 23rd Workshop on Principles of Advanced and Distributed …, 2009 | 17 | 2009 |
A bounded-optimistic, parallel beta-binders simulator S Leye, AM Uhrmacher, C Priami 2008 12th IEEE/ACM International Symposium on Distributed Simulation and …, 2008 | 17 | 2008 |
A flexible and extensible architecture for experimental model validation S Leye, AM Uhrmacher Proceedings of the 3rd International ICST Conference on Simulation Tools and …, 2010 | 15 | 2010 |
Enhancing the scalability of simulations by embracing multiple levels of parallelization J Himmelspach, R Ewald, S Leye, AM Uhrmacher 2010 Ninth International Workshop on Parallel and Distributed Methods in …, 2010 | 14 | 2010 |
One Modelling Formalism & Simulator Is Not Enough! A Perspective for Computational Biology Based on James II AM Uhrmacher, J Himmelspach, M Jeschke, M John, S Leye, C Maus, ... Formal Methods in Systems Biology: First International Workshop, FMSB 2008 …, 2008 | 14 | 2008 |
Composing problem solvers for simulation experimentation: a case study on steady state estimation S Leye, R Ewald, AM Uhrmacher PloS one 9 (4), e91948, 2014 | 8 | 2014 |
GUISE-a tool for GUIding simulation experiments S Leye, AM Uhrmacher Proceedings of the Winter Simulation Conference, 1-2, 2012 | 7 | 2012 |
A flexible architecture for performance experiments with the pi-calculus and its extensions S Leye, M John, AM Uhrmacher Proceedings of the 3rd International ICST Conference on Simulation Tools and …, 2010 | 6 | 2010 |
Performance issues in evaluating models and designing simulation algorithms R Ewald, J Himmelspach, M Jeschke, S Leye, AM Uhrmacher 2009 International Workshop on High Performance Computational Systems …, 2009 | 6 | 2009 |
A parallel beta-binders simulator S Leye, C Priami, A Uhrmacher University of Trento, 2007 | 5 | 2007 |
A flexible architecture for modeling and simulation of diffusional association F Haack, S Leye, AM Uhrmacher arXiv preprint arXiv:1002.4064, 2010 | 4 | 2010 |
Toward guiding simulation experiments S Leye University of Rostock, 2014 | 3 | 2014 |
Parallel analysis with FAMVal to speed up simulation-based model checking S Leye, O Mazemondet, AM Uhrmacher 2010 Fourth UKSim European Symposium on Computer Modeling and Simulation …, 2010 | 2 | 2010 |
Grid-Inspired Simulation of Computationally Intensive Models S Leye University of Rostock, 2008 | | 2008 |