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Elif Ozkirimli
Elif Ozkirimli
Head of Data Science and Advanced Analytics, Roche
Verified email at boun.edu.tr
Title
Cited by
Cited by
Year
DeepDTA: deep drug–target binding affinity prediction
H Öztürk, A Özgür, E Ozkirimli
Bioinformatics 34 (17), i821-i829, 2018
11962018
WideDTA: prediction of drug-target binding affinity
H Öztürk, E Ozkirimli, A Özgür
arXiv preprint arXiv:1902.04166, 2019
2132019
Membrane active peptides and their biophysical characterization
FG Avci, B Sariyar Akbulut, E Ozkirimli
Biomolecules 8 (3), 77, 2018
1882018
Exploring chemical space using natural language processing methodologies for drug discovery
H Öztürk, A Özgür, P Schwaller, T Laino, E Ozkirimli
Drug Discovery Today 25 (4), 689-705, 2020
1532020
A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction
H Öztürk, E Ozkirimli, A Özgür
BMC bioinformatics 17, 1-11, 2016
1402016
Classification of beta-lactamases and penicillin binding proteins using ligand-centric network models
H Öztürk, E Ozkirimli, A Özgür
PloS one 10 (2), e0117874, 2015
1072015
Src kinase activation: A switched electrostatic network
E Ozkirimli, CB Post
Protein Science 15 (5), 1051-1062, 2006
912006
A survey on causal discovery: theory and practice
A Zanga, E Ozkirimli, F Stella
International Journal of Approximate Reasoning 151, 101-129, 2022
872022
Balancing methods for multi-label text classification with long-tailed class distribution
Y Huang, B Giledereli, A Köksal, A Özgür, E Ozkirimli
arXiv preprint arXiv:2109.04712, 2021
812021
Crowdsourced mapping of unexplored target space of kinase inhibitors
A Cichońska, B Ravikumar, RJ Allaway, F Wan, S Park, O Isayev, S Li, ...
Nature communications 12 (1), 3307, 2021
732021
An electrostatic network and long‐range regulation of Src kinases
E Ozkirimli, SS Yadav, WT Miller, CB Post
Protein Science 17 (11), 1871-1880, 2008
722008
Comparison of three perturbation molecular dynamics methods for modeling conformational transitions
H Huang, E Ozkirimli, CB Post
Journal of Chemical Theory and Computation 5 (5), 1304-1314, 2009
662009
A novel methodology on distributed representations of proteins using their interacting ligands
H Öztürk, E Ozkirimli, A Özgür
Bioinformatics 34 (13), i295-i303, 2018
452018
Alpha7 helix plays an important role in the conformational stability of PTP1B
E Ozkirimli Olmez, B Alakent
Journal of Biomolecular Structure and Dynamics 28 (5), 675-693, 2011
382011
Generation of an analog-sensitive Syk tyrosine kinase for the study of signaling dynamics from the B cell antigen receptor
H Oh, E Ozkirimli, K Shah, ML Harrison, RL Geahlen
Journal of Biological Chemistry 282 (46), 33760-33768, 2007
372007
ChemBoost: A Chemical Language Based Approach for Protein–Ligand Binding Affinity Prediction
R Özçelik, H Öztürk, A Özgür, E Ozkirimli
Molecular Informatics, 2021
34*2021
A systematic methodology for large scale compound screening: A case study on the discovery of novel S1PL inhibitors
U Deniz, E Ozkirimli, KO Ulgen
Journal of Molecular Graphics and Modelling 63, 110-124, 2016
312016
Labels in a haystack: Approaches beyond supervised learning in biomedical applications
A Yakimovich, A Beaugnon, Y Huang, E Ozkirimli
Patterns 2 (12), 2021
262021
Superior inhibition of influenza virus hemagglutinin-mediated fusion by indole-substituted spirothiazolidinones
G Cihan-Üstündağ, M Zopun, E Vanderlinden, E Ozkirimli, L Persoons, ...
Bioorganic & medicinal chemistry 28 (1), 115130, 2020
262020
The uptake mechanism of the cell penetrating pVEC peptide
IO Akdag, E Ozkirimli
262013
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