Chen-Shan Chin / Jason Chin
Chen-Shan Chin / Jason Chin
DNAnexus
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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
CS Chin, DH Alexander, P Marks, AA Klammer, J Drake, C Heiner, ...
Nature methods 10 (6), 563, 2013
31762013
Origins of the E. coli strain causing an outbreak of hemolytic–uremic syndrome in Germany
DA Rasko, DR Webster, JW Sahl, A Bashir, N Boisen, F Scheutz, ...
New England Journal of Medicine 365 (8), 709-717, 2011
9202011
Phased diploid genome assembly with single-molecule real-time sequencing
CS Chin, P Peluso, FJ Sedlazeck, M Nattestad, GT Concepcion, A Clum, ...
Nature methods 13 (12), 1050-1054, 2016
8862016
The origin of the Haitian cholera outbreak strain
CS Chin, J Sorenson, JB Harris, WP Robins, RC Charles, ...
New England Journal of Medicine 364 (1), 33-42, 2011
7712011
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
K Berlin, S Koren, CS Chin, JP Drake, JM Landolin, AM Phillippy
Nature biotechnology 33 (6), 623-630, 2015
7472015
Validation of ITD mutations in FLT3 as a therapeutic target in human acute myeloid leukaemia
CC Smith, Q Wang, CS Chin, S Salerno, LE Damon, MJ Levis, AE Perl, ...
Nature 485 (7397), 260-263, 2012
6422012
Improved maize reference genome with single-molecule technologies
Y Jiao, P Peluso, J Shi, T Liang, MC Stitzer, B Wang, MS Campbell, ...
Nature 546 (7659), 524-527, 2017
6012017
Comparing genomic expression patterns across species identifies shared transcriptional profile in aging
SA McCarroll, CT Murphy, S Zou, SD Pletcher, CS Chin, YN Jan, ...
Nature genetics 36 (2), 197-204, 2004
4892004
Assembly and diploid architecture of an individual human genome via single-molecule technologies
M Pendleton, R Sebra, AWC Pang, A Ummat, O Franzen, T Rausch, ...
Nature methods 12 (8), 780-786, 2015
4152015
A flexible and efficient template format for circular consensus sequencing and SNP detection
KJ Travers, CS Chin, DR Rank, JS Eid, SW Turner
Nucleic acids research 38 (15), e159-e159, 2010
3752010
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
VA Schneider, T Graves-Lindsay, K Howe, N Bouk, HC Chen, PA Kitts, ...
Genome research 27 (5), 849-864, 2017
3392017
Multi-platform discovery of haplotype-resolved structural variation in human genomes
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Nature communications 10 (1), 1-16, 2019
2982019
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Nature biotechnology 37 (10), 1155-1162, 2019
2792019
Long-read sequence assembly of the gorilla genome
D Gordon, J Huddleston, MJP Chaisson, CM Hill, ZN Kronenberg, ...
Science 352 (6281), 2016
2662016
A hybrid approach for the automated finishing of bacterial genomes
A Bashir, AA Klammer, WP Robins, CS Chin, D Webster, E Paxinos, ...
Nature biotechnology 30 (7), 701, 2012
2002012
Extending reference assembly models
DM Church, VA Schneider, KM Steinberg, MC Schatz, AR Quinlan, ...
Genome biology 16 (1), 1-5, 2015
1372015
HLA typing for the next generation
NP Mayor, J Robinson, AJM McWhinnie, S Ranade, K Eng, W Midwinter, ...
PloS one 10 (5), e0127153, 2015
1212015
Long-read, whole-genome shotgun sequence data for five model organisms
KE Kim, P Peluso, P Babayan, PJ Yeadon, C Yu, WW Fisher, CS Chin, ...
Scientific data 1 (1), 1-10, 2014
1082014
Chromosomal-level assembly of the Asian seabass genome using long sequence reads and multi-layered scaffolding
S Vij, H Kuhl, IS Kuznetsova, A Komissarov, AA Yurchenko, ...
PLoS genetics 12 (4), e1005954, 2016
1062016
Gene expression patterns during adaptation of a helminth parasite to different environmental niches
ER Jolly, CS Chin, S Miller, MM Bahgat, KC Lim, J DeRisi, JH McKerrow
Genome biology 8 (4), 1-13, 2007
982007
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Artikkelit 1–20