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Matti Javanainen
Matti Javanainen
Postdoctoral Researcher, Institute of Biotechnology, University of Helsinki
Verified email at helsinki.fi
Title
Cited by
Cited by
Year
Martini 3: a general purpose force field for coarse-grained molecular dynamics
PCT Souza, R Alessandri, J Barnoud, S Thallmair, I Faustino, ...
Nature methods 18 (4), 382-388, 2021
6862021
Anomalous diffusion of phospholipids and cholesterols in a lipid bilayer and its origins
JH Jeon, HMS Monne, M Javanainen, R Metzler
Physical review letters 109 (18), 188103, 2012
3192012
Protein crowding in lipid bilayers gives rise to non-Gaussian anomalous lateral diffusion of phospholipids and proteins
JH Jeon, M Javanainen, H Martinez-Seara, R Metzler, I Vattulainen
Physical Review X 6 (2), 021006, 2016
2992016
Multiscale simulations of biological membranes: the challenge to understand biological phenomena in a living substance
G Enkavi, M Javanainen, W Kulig, T Róg, I Vattulainen
Chemical reviews 119 (9), 5607-5774, 2019
2532019
Anomalous and normal diffusion of proteins and lipids in crowded lipid membranes
M Javanainen, H Hammaren, L Monticelli, JH Jeon, MS Miettinen, ...
Faraday discussions 161, 397-417, 2013
2182013
Arginine-rich cell-penetrating peptides induce membrane multilamellarity and subsequently enter via formation of a fusion pore
C Allolio, A Magarkar, P Jurkiewicz, K Baxová, M Javanainen, PE Mason, ...
Proceedings of the National Academy of Sciences 115 (47), 11923-11928, 2018
1942018
Excessive aggregation of membrane proteins in the Martini model
M Javanainen, H Martinez-Seara, I Vattulainen
PloS one 12 (11), e0187936, 2017
1662017
Mechanism of allosteric regulation of β2-adrenergic receptor by cholesterol
M Manna, M Niemelä, J Tynkkynen, M Javanainen, W Kulig, DJ Müller, ...
Elife 5, e18432, 2016
1412016
Toward atomistic resolution structure of phosphatidylcholine headgroup and glycerol backbone at different ambient conditions
A Botan, F Favela-Rosales, PFJ Fuchs, M Javanainen, M Kanduc, W Kulig, ...
The Journal of Physical Chemistry B 119 (49), 15075-15088, 2015
1372015
Membrane omega-3 fatty acids modulate the oligomerisation kinetics of adenosine A2A and dopamine D2 receptors
R Guixà-González, M Javanainen, M Gómez-Soler, B Cordobilla, ...
Scientific reports 6 (1), 19839, 2016
1152016
Mechanism for translocation of fluoroquinolones across lipid membranes
O Cramariuc, T Rog, M Javanainen, L Monticelli, AV Polishchuk, ...
Biochimica et Biophysica Acta (BBA)-Biomembranes 1818 (11), 2563-2571, 2012
1042012
A practical guide to biologically relevant molecular simulations with charge scaling for electronic polarization
E Duboue-Dijon, M Javanainen, P Delcroix, P Jungwirth, ...
The Journal of Chemical Physics 153 (5), 2020
932020
Nanoscale membrane domain formation driven by cholesterol
M Javanainen, H Martinez-Seara, I Vattulainen
Scientific reports 7 (1), 1143, 2017
912017
Molecular electrometer and binding of cations to phospholipid bilayers
A Catte, M Girych, M Javanainen, C Loison, J Melcr, MS Miettinen, ...
Physical Chemistry Chemical Physics 18 (47), 32560-32569, 2016
882016
Cationic Au nanoparticle binding with plasma membrane-like lipid bilayers: potential mechanism for spontaneous permeation to cells revealed by atomistic simulations
E Heikkila, H Martinez-Seara, AA Gurtovenko, M Javanainen, H Hakkinen, ...
The Journal of Physical Chemistry C 118 (20), 11131-11141, 2014
822014
Do lipids retard the evaporation of the tear fluid?
AH Rantamäki, M Javanainen, I Vattulainen, JM Holopainen
Investigative ophthalmology & visual science 53 (10), 6442-6447, 2012
802012
Diffusion of integral membrane proteins in protein-rich membranes
M Javanainen, H Martinez-Seara, R Metzler, I Vattulainen
The journal of physical chemistry letters 8 (17), 4308-4313, 2017
792017
Enzymatic oxidation of cholesterol: properties and functional effects of cholestenone in cell membranes
M Neuvonen, M Manna, S Mokkila, M Javanainen, T Rog, Z Liu, R Bittman, ...
PLoS One 9 (8), e103743, 2014
652014
Atomistic model for nearly quantitative simulations of Langmuir monolayers
M Javanainen, A Lamberg, L Cwiklik, I Vattulainen, OHS Ollila
Langmuir 34 (7), 2565-2572, 2018
622018
How well does cholesteryl hemisuccinate mimic cholesterol in saturated phospholipid bilayers?
W Kulig, J Tynkkynen, M Javanainen, M Manna, T Rog, I Vattulainen, ...
Journal of molecular modeling 20, 1-9, 2014
582014
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