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Saliya Ekanayake, Ph.D.
Saliya Ekanayake, Ph.D.
Senior Software Engineer, Microsoft
Verified email at microsoft.com - Homepage
Title
Cited by
Cited by
Year
Hybrid cloud and cluster computing paradigms for life science applications
J Qiu, J Ekanayake, T Gunarathne, JY Choi, SH Bae, H Li, B Zhang, ...
BMC bioinformatics 11 (12), 1-6, 2010
1012010
Big data, simulations and HPC convergence
G Fox, J Qiu, S Jha, S Ekanayake, S Kamburugamuve
Big Data Benchmarking, 3-17, 2015
812015
Anatomy of machine learning algorithm implementations in MPI, Spark, and Flink
S Kamburugamuve, P Wickramasinghe, S Ekanayake, GC Fox
The International Journal of High Performance Computing Applications 32 (1 …, 2018
412018
Towards high performance processing of streaming data in large data centers
S Kamburugamuve, S Ekanayake, M Pathirage, G Fox
2016 IEEE International Parallel and Distributed Processing Symposium …, 2016
322016
Phylogenetically structured differences in rRNA gene sequence variation among species of arbuscular mycorrhizal fungi and their implications for sequence clustering
GL House, S Ekanayake, Y Ruan, UME Schütte, W Kaonongbua, G Fox, ...
Applied and Environmental Microbiology 82 (16), 4921-4930, 2016
312016
DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences
Y Ruan, S Ekanayake, M Rho, H Tang, SH Bae, J Qiu, G Fox
Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012
282012
Spidal java: High performance data analytics with java and mpi on large multicore hpc clusters
S Ekanayake, S Kamburugamuve, GC Fox
Proceedings of the 24th High Performance Computing Symposium, 1-8, 2016
262016
Data intensive computing for bioinformatics
J Qiu, J Ekanayake, T Gunarathne, JY Choi, SH Bae, Y Ruan, ...
Data Intensive Distributed Computing: Challenges and Solutions for Large …, 2012
242012
Performance of windows multicore systems on threading and mpi
J Qiu, S Beason, SH Bae, S Ekanayake, G Fox
2010 10th IEEE/ACM International Conference on Cluster, Cloud and Grid …, 2010
222010
Integration of clustering and multidimensional scaling to determine phylogenetic trees as spherical phylograms visualized in 3 dimensions
Y Ruan, GL House, S Ekanayake, U Schütte, JD Bever, H Tang, G Fox
2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2014
212014
Java thread and process performance for parallel machine learning on multicore hpc clusters
S Ekanayake, S Kamburugamuve, P Wickramasinghe, GC Fox
2016 IEEE international conference on big data (Big Data), 347-354, 2016
192016
Generative modeling of human behavior and social interactions using abductive analysis
Y Ren, V Cedeno-Mieles, Z Hu, X Deng, A Adiga, C Barrett, S Ekanayake, ...
2018 IEEE/ACM International Conference on Advances in Social Networks …, 2018
162018
The parallelism motifs of genomic data analysis
K Yelick, A Buluç, M Awan, A Azad, B Brock, R Egan, S Ekanayake, ...
Philosophical Transactions of the Royal Society A 378 (2166), 20190394, 2020
142020
Visualizing the protein sequence universe
L Stanberry, R Higdon, W Haynes, N Kolker, W Broomall, S Ekanayake, ...
Proceedings of the 3rd international workshop on Emerging computational …, 2012
142012
Distributed many-to-many protein sequence alignment using sparse matrices
O Selvitopi, S Ekanayake, G Guidi, GA Pavlopoulos, A Azad, A Buluç
SC20: International Conference for High Performance Computing, Networking …, 2020
132020
Interpolative multidimensional scaling techniques for the identification of clusters in very large sequence sets
A Hughes, Y Ruan, S Ekanayake, SH Bae, Q Dong, M Rho, J Qiu, G Fox
BMC bioinformatics 13 (2), 1-6, 2012
122012
Networked experiments and modeling for producing collective identity in a group of human subjects using an iterative abduction framework
V Cedeno-Mieles, Z Hu, Y Ren, X Deng, A Adiga, C Barrett, N Contractor, ...
Social Network Analysis and Mining 10 (1), 1-43, 2020
92020
Midas: Multilinear detection at scale
S Ekanayake, J Cadena, U Wickramasinghe, A Vullikanti
Journal of Parallel and Distributed Computing 132, 363-382, 2019
72019
Mechanistic and data-driven agent-based models to explain human behavior in online networked group anagram games
V Cedeno-Mieles, Z Hu, X Deng, Y Ren, A Adiga, C Barrett, S Ekanayake, ...
2019 IEEE/ACM International Conference on Advances in Social Networks …, 2019
62019
Tsmap3d: Browser visualization of high dimensional time series data
S Kamburugamuve, P Wickramasinghe, S Ekanayake, C Wimalasena, ...
2016 IEEE International Conference on Big Data (Big Data), 3583-3592, 2016
62016
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