Martina Kutmon
Martina Kutmon
Assistant professor, Maastricht University, The Netherlands
Verified email at
Cited by
Cited by
The BioPAX community standard for pathway data sharing
E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ...
Nature biotechnology 28 (9), 935-942, 2010
WikiPathways: building research communities on biological pathways
T Kelder, MP Van Iersel, K Hanspers, M Kutmon, BR Conklin, CT Evelo, ...
Nucleic acids research 40 (D1), D1301-D1307, 2012
WikiPathways: capturing the full diversity of pathway knowledge
M Kutmon, A Riutta, N Nunes, K Hanspers, EL Willighagen, A Bohler, ...
Nucleic acids research 44 (D1), D488-D494, 2016
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research
DN Slenter, M Kutmon, K Hanspers, A Riutta, J Windsor, N Nunes, ...
Nucleic acids research 46 (D1), D661-D667, 2018
PathVisio 3: an extendable pathway analysis toolbox
M Kutmon, MP van Iersel, A Bohler, T Kelder, N Nunes, AR Pico, CT Evelo
PLoS Comput Biol 11 (2), e1004085, 2015
Inferring causal molecular networks: empirical assessment through a community-based effort
SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ...
Nature methods 13 (4), 310-318, 2016
CyTargetLinker: a cytoscape app to integrate regulatory interactions in network analysis
M Kutmon, T Kelder, P Mandaviya, CTA Evelo, SL Coort
PloS one 8 (12), e82160, 2013
A pathway approach to investigate the function and regulation of SREBPs
S Daemen, M Kutmon, CT Evelo
Genes & nutrition 8 (3), 289-300, 2013
Using the semantic web for rapid integration of WikiPathways with other biological online data resources
A Waagmeester, M Kutmon, A Riutta, R Miller, EL Willighagen, CT Evelo, ...
PLoS computational biology 12 (6), e1004989, 2016
WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization
M Kutmon, S Lotia, CT Evelo, AR Pico
F1000Research 3, 2014
Reactome from a WikiPathways perspective
A Bohler, G Wu, M Kutmon, LA Pradhana, SL Coort, K Hanspers, R Haw, ...
PLoS computational biology 12 (5), e1004941, 2016
From SNPs to pathways: Biological interpretation of type 2 diabetes (T2DM) genome wide association study (GWAS) results
E Cirillo, M Kutmon, M Gonzalez Hernandez, T Hooimeijer, ME Adriaens, ...
PloS one 13 (4), e0193515, 2018
Visualizing the regulatory role of Angiopoietin-like protein 8 (ANGPTL8) in glucose and lipid metabolic pathways
A Siddiqa, E Cirillo, SHK Tareen, A Ali, M Kutmon, LMT Eijssen, J Ahmad, ...
Genomics 109 (5-6), 408-418, 2017
A network biology workflow to study transcriptomics data of the diabetic liver
M Kutmon, CT Evelo, SL Coort
BMC genomics 15 (1), 971, 2014
The systems biology format converter
N Rodriguez, JB Pettit, P Dalle Pezze, L Li, A Henry, MP van Iersel, ...
BMC bioinformatics 17 (1), 154, 2016
Exploring the cellular network of metabolic flexibility in the adipose tissue
SHK Tareen, M Kutmon, ME Adriaens, ECM Mariman, TM de Kok, ...
Genes & nutrition 13 (1), 17, 2018
Pathway analysis of transcriptomic data shows immunometabolic effects of vitamin D
AM Garcia, M Kutmon, L Eijssen, M Hewison, CT Evelo, SL Coort
Journal of molecular endocrinology 60 (2), 95-108, 2018
Integrative network-based analysis of mRNA and microRNA expression in 1, 25-dihydroxyvitamin D 3-treated cancer cells
M Kutmon, SL Coort, K de Nooijer, C Lemmens, CT Evelo
Genes & nutrition 10 (5), 1-12, 2015
Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment
A Bohler, LMT Eijssen, MP van Iersel, C Leemans, EL Willighagen, ...
BMC bioinformatics 16 (1), 267, 2015
CyTargetLinker app update: A flexible solution for network extension in Cytoscape
M Kutmon, F Ehrhart, EL Willighagen, CT Evelo, SL Coort
F1000Research 7, 2018
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