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Christina Boucher
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MEGARes: an antimicrobial resistance database for high throughput sequencing
SM Lakin, C Dean, NR Noyes, A Dettenwanger, AS Ross, E Doster, ...
Nucleic acids research 45 (D1), D574-D580, 2017
2622017
MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data
E Doster, SM Lakin, CJ Dean, C Wolfe, JG Young, C Boucher, KE Belk, ...
Nucleic acids research 48 (D1), D561-D569, 2020
1402020
Use of metagenomic shotgun sequencing technology to detect foodborne pathogens within the microbiome of the beef production chain
X Yang, NR Noyes, E Doster, JN Martin, LM Linke, RJ Magnuson, H Yang, ...
Applied and environmental microbiology 82 (8), 2433-2443, 2016
1242016
Succinct colored de Bruijn graphs
MD Muggli, A Bowe, NR Noyes, PS Morley, KE Belk, R Raymond, T Gagie, ...
Bioinformatics 33 (20), 3181-3187, 2017
1082017
Resistome diversity in cattle and the environment decreases during beef production
NR Noyes, X Yang, LM Linke, RJ Magnuson, A Dettenwanger, S Cook, ...
elife 5, e13195, 2016
1022016
Characterization of the resistome in manure, soil and wastewater from dairy and beef production systems
NR Noyes, X Yang, LM Linke, RJ Magnuson, SR Cook, R Zaheer, H Yang, ...
Scientific reports 6 (1), 1-12, 2016
1002016
Exploring non-touchscreen gestures for smartwatches
SS Arefin Shimon, C Lutton, Z Xu, S Morrison-Smith, C Boucher, J Ruiz
Proceedings of the 2016 chi conference on human factors in computing systems …, 2016
862016
SEQuel: improving the accuracy of genome assemblies
R Ronen, C Boucher, H Chitsaz, P Pevzner
Bioinformatics 28 (12), i188-i196, 2012
792012
The SLOW GROWTH3 Pentatricopeptide Repeat Protein Is Required for the Splicing of Mitochondrial NADH Dehydrogenase Subunit7 Intron 2 in Arabidopsis
WY Hsieh, JC Liao, CY Chang, T Harrison, C Boucher, MH Hsieh
Plant Physiology 168 (2), 490-501, 2015
732015
Variable-order de Bruijn graphs
C Boucher, A Bowe, T Gagie, SJ Puglisi, K Sadakane
2015 data compression conference, 383-392, 2015
712015
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable
C Mavian, SK Pond, S Marini, BR Magalis, AM Vandamme, S Dellicour, ...
Proceedings of the National Academy of Sciences 117 (23), 12522-12523, 2020
702020
Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing
NR Noyes, ME Weinroth, JK Parker, CJ Dean, SM Lakin, RA Raymond, ...
Microbiome 5 (1), 1-13, 2017
502017
Efficient construction of a complete index for pan-genomics read alignment
A Kuhnle, T Mun, C Boucher, T Gagie, B Langmead, G Manzini
Journal of Computational Biology 27 (4), 500-513, 2020
492020
Characterization of the microbial resistome in conventional and “raised without antibiotics” beef and dairy production systems
P Rovira, T McAllister, SM Lakin, SR Cook, E Doster, NR Noyes, ...
Frontiers in microbiology 10, 1980, 2019
492019
Misassembly detection using paired-end sequence reads and optical mapping data
MD Muggli, SJ Puglisi, R Ronen, C Boucher
Bioinformatics 31 (12), i80-i88, 2015
482015
Prefix-free parsing for building big BWTs
C Boucher, T Gagie, A Kuhnle, B Langmead, G Manzini, T Mun
Algorithms for Molecular Biology 14 (1), 1-15, 2019
472019
Investigating effects of tulathromycin metaphylaxis on the fecal resistome and microbiome of commercial feedlot cattle early in the feeding period
E Doster, P Rovira, NR Noyes, BA Burgess, X Yang, MD Weinroth, ...
Frontiers in microbiology 9, 1715, 2018
452018
Data structures based on k-mers for querying large collections of sequencing data sets
C Marchet, C Boucher, SJ Puglisi, P Medvedev, M Salson, R Chikhi
Genome Research 31 (1), 1-12, 2021
432021
Efficient indexed alignment of contigs to optical maps
MD Muggli, SJ Puglisi, C Boucher
International Workshop on Algorithms in Bioinformatics, 68-81, 2014
43*2014
Building large updatable colored de Bruijn graphs via merging
Bioinformatics, 2019
31*2019
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Articles 1–20