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| Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons BJ Haas, D Gevers, AM Earl, M Feldgarden, DV Ward, G Giannoukos, ... Genome research 21 (3), 494-504, 2011 | 3291 | 2011 |
| Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment XC Morgan, TL Tickle, H Sokol, D Gevers, KL Devaney, DV Ward, ... Genome biology 13 (9), 1-18, 2012 | 2642 | 2012 |
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| A catalog of reference genomes from the human microbiome Human Microbiome Jumpstart Reference Strains Consortium, KE Nelson, ... Science 328 (5981), 994-999, 2010 | 804 | 2010 |
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| Recovery of ethanol-induced Akkermansia muciniphila depletion ameliorates alcoholic liver disease C Grander, TE Adolph, V Wieser, P Lowe, L Wrzosek, B Gyongyosi, ... Gut 67 (5), 891-901, 2018 | 457 | 2018 |
| Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung JD Gawronski, SMS Wong, G Giannoukos, DV Ward, BJ Akerley Proceedings of the National Academy of Sciences 106 (38), 16422-16427, 2009 | 390 | 2009 |
| Early empiric antibiotic use in preterm infants is associated with lower bacterial diversity and higher relative abundance of Enterobacter C Greenwood, AL Morrow, AJ Lagomarcino, M Altaye, DH Taft, Z Yu, ... The Journal of pediatrics 165 (1), 23-29, 2014 | 387 | 2014 |
| Strain-level microbial epidemiology and population genomics from shotgun metagenomics M Scholz, DV Ward, E Pasolli, T Tolio, M Zolfo, F Asnicar, DT Truong, ... Nature methods 13 (5), 435-438, 2016 | 378 | 2016 |
| Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants AL Morrow, AJ Lagomarcino, KR Schibler, DH Taft, Z Yu, B Wang, ... Microbiome 1 (1), 1-16, 2013 | 320 | 2013 |
| Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease E Papa, M Docktor, C Smillie, S Weber, SP Preheim, D Gevers, ... PloS one 7 (6), e39242, 2012 | 314 | 2012 |
| Evaluation of 16S rDNA-based community profiling for human microbiome research Jumpstart Consortium Human Microbiome Project Data Generation Working Group PloS one 7 (6), e39315, 2012 | 297 | 2012 |
| Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes G Giannoukos, DM Ciulla, K Huang, BJ Haas, J Izard, JZ Levin, J Livny, ... Genome biology 13, 1-13, 2012 | 260 | 2012 |
| Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut C Milani, GA Lugli, S Duranti, F Turroni, L Mancabelli, C Ferrario, ... Scientific reports 5 (1), 15782, 2015 | 245 | 2015 |
| Whole genome characterization of the mechanisms of daptomycin resistance in clinical and laboratory derived isolates of Staphylococcus aureus AY Peleg, S Miyakis, DV Ward, AM Earl, A Rubio, DR Cameron, S Pillai, ... PloS one 7 (1), e28316, 2012 | 244 | 2012 |
| Alzheimer’s disease microbiome is associated with dysregulation of the anti-inflammatory P-glycoprotein pathway JP Haran, SK Bhattarai, SE Foley, P Dutta, DV Ward, V Bucci, ... MBio 10 (3), 10.1128/mbio. 00632-19, 2019 | 224 | 2019 |
| The success of Acinetobacter species; genetic, metabolic and virulence attributes AY Peleg, A de Breij, MD Adams, GM Cerqueira, S Mocali, M Galardini, ... PloS one 7 (10), e46984, 2012 | 214 | 2012 |
| Peptide linkage mapping of the Agrobacterium tumefaciens vir-encoded type IV secretion system reveals protein subassemblies DV Ward, O Draper, JR Zupan, PC Zambryski Proceedings of the National Academy of Sciences 99 (17), 11493-11500, 2002 | 177 | 2002 |
| Metagenomic sequencing with strain-level resolution implicates uropathogenic E. coli in necrotizing enterocolitis and mortality in preterm infants DV Ward, M Scholz, M Zolfo, DH Taft, KR Schibler, A Tett, N Segata, ... Cell reports 14 (12), 2912-2924, 2016 | 162 | 2016 |
