Noushin Ghaffari
Noushin Ghaffari
Verified email at pvamu.edu - Homepage
Title
Cited by
Cited by
Year
Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens
Y Wang, N Ghaffari, CD Johnson, UM Braga-Neto, H Wang, R Chen, ...
BMC bioinformatics 12 (10), 1-7, 2011
1352011
Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture
N Ghaffari, A Sanchez-Flores, R Doan, KD Garcia-Orozco, PL Chen, ...
Scientific reports 4 (1), 1-10, 2014
752014
Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture
CD Johnson, JS Carrasco, A Ochoa-Leyva, D Ryan, SV Dindot, ...
Nature Publishing Group, 2014
75*2014
Whole-genome sequencing and genetic variant analysis of a Quarter Horse mare
R Doan, ND Cohen, J Sawyer, N Ghaffari, CD Johnson, SV Dindot
BMC genomics 13 (1), 1-12, 2012
732012
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
Nature biotechnology, 1-9, 2020
452020
Intervention in gene regulatory networks via greedy control policies based on long-run behavior
X Qian, I Ivanov, N Ghaffari, ER Dougherty
BMC Systems Biology 3 (1), 1-16, 2009
442009
Tissue-specific BMAL1 cistromes reveal that rhythmic transcription is associated with rhythmic enhancer–enhancer interactions
JR Beytebiere, AJ Trott, BJ Greenwell, CA Osborne, H Vitet, J Spence, ...
Genes & development 33 (5-6), 294-309, 2019
392019
A robust benchmark for germline structural variant detection
JM Zook, NF Hansen, ND Olson, LM Chapman, JC Mullikin, C Xiao, ...
BioRxiv, 664623, 2019
372019
State reduction for network intervention in probabilistic Boolean networks
X Qian, N Ghaffari, I Ivanov, ER Dougherty
Bioinformatics 26 (24), 3098-3104, 2010
342010
A CoD-based reduction algorithm for designing stationary control policies on Boolean networks
N Ghaffari, I Ivanov, X Qian, ER Dougherty
Bioinformatics 26 (12), 1556-1563, 2010
332010
Modeling the next generation sequencing sample processing pipeline for the purposes of classification
N Ghaffari, MR Yousefi, CD Johnson, I Ivanov, ER Dougherty
BMC bioinformatics 14 (1), 1-14, 2013
322013
A Colletotrichum graminicola mutant deficient in the establishment of biotrophy reveals early transcriptional events in the maize anthracnose disease interaction
MF Torres, N Ghaffari, EAS Buiate, N Moore, S Schwartz, CD Johnson, ...
BMC genomics 17 (1), 1-24, 2016
212016
Selection policy-induced reduction mappings for Boolean networks
I Ivanov, P Simeonov, N Ghaffari, X Qian, ER Dougherty
IEEE Transactions on Signal Processing 58 (9), 4871-4882, 2010
182010
Biomarker discovery across annotated and unannotated microarray datasets using semi-supervised learning
C Harris, N Ghaffari
BMC genomics 9 (2), 1-6, 2008
152008
Identifying the most significant genes from gene expression profiles for sample classification
H Al-Mubaid, N Ghaffari
2006 IEEE International Conference on Granular Computing, 655-658, 2006
102006
The Pacific Biosciences de novo assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, Haemaphysalis longicornis Neumann, 1901
FD Guerrero, KG Bendele, N Ghaffari, J Guhlin, KR Gedye, KE Lawrence, ...
Data in brief 27, 104602, 2019
82019
Evaluating Active Learning Approaches for Teaching Intermediate Programming at an Early Undergraduate Level
DK Chakravorty, M Pennings
The Journal of Computational Science Education 10 (1), 2019
6*2019
Examining De Novo transcriptome assemblies via a quality assessment pipeline
N Ghaffari, OA Arshad, H Jeong, J Thiltges, MF Criscitiello, BJ Yoon, ...
IEEE/ACM transactions on computational biology and bioinformatics 15 (2 …, 2015
62015
A CoD-based stationary control policy for intervening in large gene regulatory networks
N Ghaffari, I Ivanov, X Qian, ER Dougherty
BMC bioinformatics 12 (10), 1-14, 2011
62011
Effectively Extending Computational Training Using Informal Means at Larger Institutions
SDL Dhruva K. Chakravorty, Marinus "Maikel" Pennings, Honggao Liu, Zengyu ...
Journal of Computational Science Education 10 (1), 40-47, 2019
42019
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Articles 1–20