James Costello
James Costello
University of Colorado Anschutz Medical Campus
Verified email at ucdenver.edu - Homepage
Title
Cited by
Cited by
Year
Evolution of genes and genomes on the Drosophila phylogeny
AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ...
Nature 450 (7167), 203-218, 2007
20572007
Wisdom of crowds for robust gene network inference
D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ...
Nature methods 9 (8), 796-804, 2012
14172012
A community effort to assess and improve drug sensitivity prediction algorithms
JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ...
Nature biotechnology 32 (12), 1202-1212, 2014
5812014
Next-generation machine learning for biological networks
DM Camacho, KM Collins, RK Powers, JC Costello, JJ Collins
Cell 173 (7), 1581-1592, 2018
4382018
Bactericidal antibiotics induce mitochondrial dysfunction and oxidative damage in mammalian cells
S Kalghatgi, CS Spina, JC Costello, M Liesa, JR Morones-Ramirez, ...
Science translational medicine 5 (192), 192ra85-192ra85, 2013
3942013
Transcriptional profiling of stroma from inflamed and resting lymph nodes defines immunological hallmarks
D Malhotra, AL Fletcher, J Astarita, V Lukacs-Kornek, P Tayalia, ...
Nature immunology 13 (5), 499-510, 2012
3892012
Oncogenic NRAS signaling differentially regulates survival and proliferation in melanoma
LN Kwong, JC Costello, H Liu, S Jiang, TL Helms, AE Langsdorf, ...
Nature medicine 18 (10), 1503-1510, 2012
3282012
TERT promoter mutations and telomerase reactivation in urothelial cancer
S Borah, L Xi, AJ Zaug, NM Powell, GM Dancik, SB Cohen, JC Costello, ...
Science 347 (6225), 1006-1010, 2015
2672015
A community computational challenge to predict the activity of pairs of compounds
M Bansal, J Yang, C Karan, MP Menden, JC Costello, H Tang, G Xiao, ...
Nature biotechnology 32 (12), 1213-1222, 2014
2172014
Tumor-derived cell lines as molecular models of cancer pharmacogenomics
A Goodspeed, LM Heiser, JW Gray, JC Costello
Molecular Cancer Research 14 (1), 3-13, 2016
2062016
Intrathymic programming of effector fates in three molecularly distinct γδ T cell subtypes
K Narayan, KE Sylvia, N Malhotra, CC Yin, G Martens, T Vallerskog, ...
Nature immunology 13 (5), 511-518, 2012
1882012
Crowdsourcing biomedical research: leveraging communities as innovation engines
J Saez-Rodriguez, JC Costello, SH Friend, MR Kellen, L Mangravite, ...
Nature Reviews Genetics 17 (8), 470-486, 2016
1432016
“Reverse ecology” and the power of population genomics
YF Li, JC Costello, AK Holloway, MW Hahn
Evolution: International Journal of Organic Evolution 62 (12), 2984-2994, 2008
1352008
Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open …
J Guinney, T Wang, TD Laajala, KK Winner, JC Bare, EC Neto, SA Khan, ...
The Lancet Oncology 18 (1), 132-142, 2017
1192017
Transcriptomes of the B and T lineages compared by multiplatform microarray profiling
MW Painter, S Davis, RR Hardy, D Mathis, C Benoist, ...
The Journal of Immunology 186 (5), 3047-3057, 2011
1062011
Concurrent alterations in TERT, KDM6A, and the BRCA pathway in bladder cancer
ML Nickerson, GM Dancik, KM Im, MG Edwards, S Turan, J Brown, ...
Clinical Cancer Research 20 (18), 4935-4948, 2014
1002014
Monocytic subclones confer resistance to venetoclax-based therapy in patients with acute myeloid leukemia
S Pei, DA Pollyea, A Gustafson, BM Stevens, M Minhajuddin, R Fu, ...
Cancer discovery 10 (4), 536-551, 2020
962020
Transcriptome analysis identifies regulators of hematopoietic stem and progenitor cells
R Gazit, BS Garrison, TN Rao, T Shay, J Costello, J Ericson, F Kim, ...
Stem cell reports 1 (3), 266-280, 2013
912013
Coordinate loss of MAP3K7 and CHD1 promotes aggressive prostate cancer
LU Rodrigues, L Rider, C Nieto, L Romero, A Karimpour-Fard, M Loda, ...
Cancer research 75 (6), 1021-1034, 2015
752015
Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function
JC Costello, MM Dalkilic, SM Beason, JR Gehlhausen, R Patwardhan, ...
Genome biology 10 (9), 1-29, 2009
702009
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Articles 1–20